Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2201 |
Symbol | |
ID | 3963148 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 2405385 |
End bp | 2407457 |
Gene Length | 2073 bp |
Protein Length | 690 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637917022 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_523456 |
Protein GI | 89900985 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.378461 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAACGA ACGATTTGTT CCCACCCGAG CCGCCGCTGC CTGATCCTGC CCATGTGGCG CAGCTCAGGC GCGCGCTGCA TGAACACGCT CATCACTATT ACGTGGAGGA CGCGCCGACC ATTCCGGATG CCGAGTACGA CCGCATGTTT CAGGAGTTGC AGGCGATCGA GGCACAACAT CCGGAGCTGA TCACGCCAGA CTCTCCCACC CAGCGCGTCG GTGGGCGAGC TTTGGAACAG TTTGCCAGCG TGCGCCACGC CGTGCCCATG CTGAGCATTC GCACTGAAAC CGACACCGAG GCCAGTGGCG CGCGCAATTT TGACACTCGC GTGCGGCGGG AACTCGGCTT GGACGAGGCT GCCCCCGCCG TGGCGTACGT GGCCGAACCC AAGTTTGACG GTCTGGCCAT GAACTTGCGT TATGAATCTG GGATCCTGGT GCAGGCGGCT ACGCGCGGCG ACGGTGAAGT GGGGGAGGAC GTGACCCAAA ATGTCCGCAC CATCGGTCAA ATTCCCCTGC GGCTGCCGGC TGACGCGCCG TCGATCCTGG AGGTACGCGG CGAGGTGTAC ATGCGCCGCG ATGACTTTGA GAAGCTGAAC GAACAGCAGC GAGCGCGCGG CCAAAAGACC TTCGTCAACC CGCGCAACGC CGCCGCCGGT GCGGTGCGCC AGCTGGACCC GGCTATTGCC GCCCAGCGCC CCTTGAGCTT CTTTGCCTAT GGTTTGGGTG AGGTCACACC AGAGCAGGCG GGTGGCCCCG CGTTTGGAAC ACATTATGAG CTGTTGCAAG CCCTGAAAAC CTGGGGTTTT CCGGTGTCAG CCCTCGTGGG TCTTGCACAA GGCGCTACTG AATTAGTAGC GTATTACGAA TCGATAGCTC GCCAGCGTGA CGCACTGCCG TTTGACATTG ACGGCGTGGT CTACAAGGTC AACAGCCTGG CGCTGCAGCG CCGCATGGGC TTTGTGACGC GCGAACCGCG CTGGGCGGTG GCGCACAAGT TCCCGGCCCA GGAGCAGTTC ACCACCGTGC TGGACATCGA TGTGCAGGTG GGGCGCACCG GCAAGCTCAC GCCGGTGGCC AAGCTGGCGC CGGTGTTTGT GGGCGGTGTC ACGGTCACCA ACGCCACCCT GCACAACGAA GACGAGGCGC GACGCAAGGA TGTGCGCGTG GGCGACACGG TCATCGTGCG TCGTGCCGGC GACGTGATTC CCGAAGTGGT TTCGGTGTTG CTGGACAAGC GTCAGCCCGG CGCAACAGAG TTCACCATGC CGCGGCAGTG TCCGGTGTGC GGCAGCGCTG CCGTGCGCGA AGAAGGTGAA GTTGACTACC GCTGTACCGG CGGGCTGTTC TGCAGCGCCC AACGCAAGCA GGCGATCCTG CATTTTGCCC AGCGCCGGGC GGTCGAGGTG GAGGGGCTGG GCGAAAAACT GGTTGATCAG CTGGTTGATG GCCACGTTAT TCGCATCCTG CCGGACCTGT ACCGGCTGGG CCTGACCGCG CTGGCCAGTC TGGACCGCAT GGCCGACAAA TCGGCGCAGA ACATCCTGCA AGCCTTGGAA AAATCGAAGC AGACCACGCT GCCGCGCTTT CTGTTCGGAT TGGGCATTCG GCATGTGGGC GAGGCCACCG CCAAGGAACT GGCGCGGCAC TTTGGCAGCC TGGACGCCGT GATGGACGCT TCTTTGGAAC AACTGCTGCA GGTCAACGAC ATTGGCCCCA TCGTGGCGCA AAGCTTGCGC ACATTTTTCG ACCAGCCGCA TAACCGTGAG GTGGTGGAGC AACTGCGCGC CTGTGGTGTG ACCTGGCAAG AGGGCCCTCC GGCGCCGGTC ACTCCGACGC CACTCTCAGG CAAAACCTTC GTCATCACCG GCACCCTGCC CAGCATGAGC CGCGATGAGG CCAAAGACCT GATTGAGGCC GCCGGCGGCA AGGTGGCGGG TTCGGTCAGC AAGAAAACCA CTTTTGTGGT GGCGGGCACT GAGGCGGGCA GCAAGCTCAC CAAGGCGCAG GAACTGGGCG TTGCCGTGTT GGATGAAGCT GGTTTGAAGG AGTTGCTTGA TGGCCATTCG TGA
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Protein sequence | MATNDLFPPE PPLPDPAHVA QLRRALHEHA HHYYVEDAPT IPDAEYDRMF QELQAIEAQH PELITPDSPT QRVGGRALEQ FASVRHAVPM LSIRTETDTE ASGARNFDTR VRRELGLDEA APAVAYVAEP KFDGLAMNLR YESGILVQAA TRGDGEVGED VTQNVRTIGQ IPLRLPADAP SILEVRGEVY MRRDDFEKLN EQQRARGQKT FVNPRNAAAG AVRQLDPAIA AQRPLSFFAY GLGEVTPEQA GGPAFGTHYE LLQALKTWGF PVSALVGLAQ GATELVAYYE SIARQRDALP FDIDGVVYKV NSLALQRRMG FVTREPRWAV AHKFPAQEQF TTVLDIDVQV GRTGKLTPVA KLAPVFVGGV TVTNATLHNE DEARRKDVRV GDTVIVRRAG DVIPEVVSVL LDKRQPGATE FTMPRQCPVC GSAAVREEGE VDYRCTGGLF CSAQRKQAIL HFAQRRAVEV EGLGEKLVDQ LVDGHVIRIL PDLYRLGLTA LASLDRMADK SAQNILQALE KSKQTTLPRF LFGLGIRHVG EATAKELARH FGSLDAVMDA SLEQLLQVND IGPIVAQSLR TFFDQPHNRE VVEQLRACGV TWQEGPPAPV TPTPLSGKTF VITGTLPSMS RDEAKDLIEA AGGKVAGSVS KKTTFVVAGT EAGSKLTKAQ ELGVAVLDEA GLKELLDGHS
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