Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2136 |
Symbol | truB |
ID | 3962088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 2317103 |
End bp | 2318119 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637916956 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_523391 |
Protein GI | 89900920 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0388744 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGCGC CGCGTGCACG GGTTGCCAGG CGCCCCGTGC ACGGGGTGCT GTTGCTGGAC AAGCCTTTGG GACTGTCGAG CAATGACGCC TTGCAAAAAG CCAAGTGGCT GTTGCGGGCT GAGAAGGCCG GCCACACCGG CACGCTCGAT CCACTGGCCA CGGGTCTGTT GCCGCTGTGC TTTGGTGCCG CCACCAAGTT CAGCCAGCTT CAGCTGGATG CGGACAAAAC GTACGAGGCG GTGGCGCGGC TGGGTGTGAA AACAAGTACT GGCGACGCCG AGGGCGAGCT CATTGAAGAG CGGTCGGTGA AGGTGACAGA GCAAGACCTG AGTGATGTGG CGATACGCTT CACCGGGCTG ATTCGGCAGA TACCGCCGAT GCACAGCGCC TTGAAAAAAG ACGGCAAGGC CCTGTACGAA TACGCGCGGG CCGGTATCGA GGTGGAGCGG GAAGGTCGTG ACGTCACAAT TTATAAGCTA AATATGGCTC TAGCCCCCGT GGATACTGAA TATTTAACTA TTAAAATGAT AGTTAAATGC AGCAAAGGCA CTTACATCCG GACCCTGGCT GAGGATATCG GTGAAGCCCT GGGATGCGGC GCGCATCTGA CGGCGCTACG CCGGGTTGAG ACGGGTGGCT TCGATGTGGC GCAGTGTGTG ACGCTGGCGG CATTGGAGGC GATGACGGAT GAAGAGAGAT TGAGCCAGCT GCTGCCGGTG GAGTCGCTGC TGAGCGAGCA CACGGTCGTC ACGCTGGACA CTGAAAATGC AGGGCGGTTC CTGAGCGGCT TGCGCCGCCG GGGAAATTGG CCTGACAACG GGCAAGTTGC CGTTTATGGC GAAAAACCGC GTGCCTTATT GGGCACTGGC CATGTTGTGG CAGGTGAGTT GATACCAGGG CGGCTATTGA GTCCGCTTGA GATTGAGAAA ATAGTGGGAG ATTGCGAATC GGGGTCCAGC GTGCTGCACG CAGCCCCGCC CTCAGCCCTC CAGACGACAG ACTTTGACGA GATTTAA
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Protein sequence | MNAPRARVAR RPVHGVLLLD KPLGLSSNDA LQKAKWLLRA EKAGHTGTLD PLATGLLPLC FGAATKFSQL QLDADKTYEA VARLGVKTST GDAEGELIEE RSVKVTEQDL SDVAIRFTGL IRQIPPMHSA LKKDGKALYE YARAGIEVER EGRDVTIYKL NMALAPVDTE YLTIKMIVKC SKGTYIRTLA EDIGEALGCG AHLTALRRVE TGGFDVAQCV TLAALEAMTD EERLSQLLPV ESLLSEHTVV TLDTENAGRF LSGLRRRGNW PDNGQVAVYG EKPRALLGTG HVVAGELIPG RLLSPLEIEK IVGDCESGSS VLHAAPPSAL QTTDFDEI
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