| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2129 |
|---|
| Symbol | |
|---|
| ID | 3962081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2307640 |
|---|
| End bp | 2308674 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637916949 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_523384 |
|---|
| Protein GI | 89900913 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4174] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.291354 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAGTT ACATCCTCAA ACGCTTGCTG CTGATGATTC CCACCTTGCT GGGGGTCTTG
CTGATCACTT TCATGGTGGT TCAATTTGTG CCCGGTGGCC CGGTAGAACA ATACCTGGCT
GAGGCCAAGG CGGGCAGTGG CAAAGGGTCT GGTGCTGAAA GTGGCGGCTT GAGTTACCGC
GGCGCGCAAG GGGTGGACCC GAGGCGCATC GAGCAGATCA AGGCGCTCTA CGGTTTTGAC
AAACCCGCGC ACGAGCGTTT CCTGCAAATG CTGGGGCAAT TTGCCCGTTT TGATCTGGGG
CGGAGCTTTT TCCAGAACAA AAGTGTGTCG GAGCTGATTT GGGAGAAGCT GCCGGTCTCC
ATCAGTCTGG GACTGTGGAC ATTCTTTATC AGCTACTTGA TTGCCGTGCC GCTGGGCGTG
GCCAAAGCGG TGCGCGCGGG TTCGCGTTTT GACTTTGTCA CGACCCTGCT GGTGCTGTTT
GGCTACGCCA TTCCCGGCTT CGTCCTGGGG GTGGCGCTGC TGGTGATTTT TGGCGGACAG
CTGCAGTGGT TTCCGTTGCG CGGCTTGACG TCGGGCAACT GGGATGAGCT CAGCTGGGGT
GCGCGCGTGG TCGATTACCT GTGGCACATC GCCCTGCCGG TCACCGCCAT GGTGCTGGGC
AGCTTCGCCG TCACCACCAT GCTAACCAAG AACGCGTTTC TGGAAGAAAT CCGCAAGCAG
TACGTCGTCA CGGCGCGTGC CAAAGGCCTG GACGAGCGCC AGGTGCTGTG GAAGCACGTT
TTTCGCAATG CGCTGATTCC TATCATCACC GGCTTCCCGG CGGCGTTTAT TGGCGCTTTT
TTTACCGGCT CCTTGCTGAT CGAGACGCTG TTTTCGCTCG ATGGCTTGGG GCTGCTGAGT
TACGAGAGTG TGATCCGGCG CGATTACCCG GTGGTGCTGG GCACCCTTTA CTTCTTTACG
CTGATTGGTC TGGTGACCAA GCTGATTTCA GATTTGTCTT ATGTTTGGGT CGATCCGCGT
GTCAAATTTG ACTAA
|
|---|
| Protein sequence | MLSYILKRLL LMIPTLLGVL LITFMVVQFV PGGPVEQYLA EAKAGSGKGS GAESGGLSYR
GAQGVDPRRI EQIKALYGFD KPAHERFLQM LGQFARFDLG RSFFQNKSVS ELIWEKLPVS
ISLGLWTFFI SYLIAVPLGV AKAVRAGSRF DFVTTLLVLF GYAIPGFVLG VALLVIFGGQ
LQWFPLRGLT SGNWDELSWG ARVVDYLWHI ALPVTAMVLG SFAVTTMLTK NAFLEEIRKQ
YVVTARAKGL DERQVLWKHV FRNALIPIIT GFPAAFIGAF FTGSLLIETL FSLDGLGLLS
YESVIRRDYP VVLGTLYFFT LIGLVTKLIS DLSYVWVDPR VKFD
|
|---|
| |