| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2090 |
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| Symbol | |
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| ID | 3961256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2263771 |
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| End bp | 2265516 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637916909 |
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| Product | Lipid A export ATP-binding/permease protein MsbA |
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| Protein accession | YP_523345 |
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| Protein GI | 89900874 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAAAC CGATTTCTCT GAGTAATCGT GCCTTGTACG CCCGGTTGCT GTCGTATGTG
CGGCCCTACT GGAAAGCAGT TTTTCTGGCT GTCATAGGAA TGGTGGGAAC TGCGGCTACG
GAACCTGTGT TTCCAGCCAT CATGAAATAC CTGCTGGACA ACGGTTTTCA AGCCAAAGAC
GCGCGAATGG TTTGGCTCAT ACCCATGGGC ATTGTGACTT TGTTCTTGGT AAGAAGTGTC
ATTGTTTATT GCACCGGCTA CCTGATGACG TGGATTTCCA GTCGACTCGT CACCGACCTG
CGACGAACCA TGTTTGCCAA ACTCCTCGCG CTACCGACCC ATCACTATGA CGAGCATTCG
GCGGGGCAGA TGATCTCGCG GCTGGTGTAC GACGTGAGCA ACGTAACCGA TGCGGCTACC
AGCGCTCTAA TTACGCTGGT GCGGGAATCG TTGACGGCTA TCGCACTGAT TGGATATCTG
CTTTACCTGG ACTGGAAGTT GACGCTCATC ACTTTGGCCA TCGGGCCCGT GATCGCTTTC
ACTGTTAAAT CATTCAGTAA GCGAATGAGG GCGGCAAGCC AAAAAAGCCT GCAGGCGATG
CGTTTCATCT CGCACACCAT TGAGGAAACA ATTTCGGCCC AGCAGGTGGT CAAGATCTTT
GGTGGGCAGG AGCGGCAACA AAAACAATTC TTTGAGGCCA CGGAACAATT CCGCCGCGCC
CAAATGCGAG AAGCTATCCC CGCGTCGGCG ATGACCCCGA TCACGCATAT CGCTGCATCG
GTGGCGGTTG CGATCATTGC TTTCCTGGCT TTGAGCCAGT CTACGGGTCA GGCTGGCGCA
TCAGCGGGTA GCTTCATCTC GTTTATCACG GCCATGCTGA TGCTGATTTC CCCAGTCAAG
CAACTCGCAA CCGTGAACCC GACAATCCAG CGCGGCTTGG CAGCATCGGA GAGCATCTTC
GAGCTTCTGG ACGCAGCGCA GGAAGACGAC CGCGGCAAGC GGCAGTTGCT TCGCAGCAAA
GGGGAAATCT GTTTTGACAA TGTCAGCCTT CGTTACCTGG GCGCAGAGCG ATTTGCCCTG
AATGACATCA GTTTCCGGAT TACTGCAGGC CAAACCGTGG CACTGGTTGG TGCTTCAGGC
GGCGGCAAGA GCACGATCAG CGCCTTGATT CCGCGCTTCT ACCCGGTCAC ATCAGGCCGA
GTCCTGGTTG ACGGTATTGA CATCAATGAC ATCACGCTGG CCAGCCTGCG CCAAAACATC
GCGCTAGTCA GCCAGAATGT CATACTTTTT AACGATACCG TCGGAGCCAA TATTGCCTAC
GGATCACTCC AGACCTGCAG TCGGGATGAT GTGATCAGGG CCGCGCGCGC GGCCAACGCC
TGGGACTTTA TTGAGCAGTT GCCCAATGGC CTGGACACGC CCATCGGTGA AAATGGCGCC
AAGCTCTCTG GTGGTCAACG TCAACGCCTC GCCATCGCTC GTGCCTTGCT CAAGGACGCA
CCCATTCTCA TACTCGACGA AGCCACTTCG GCGCTCGATA CAGAATCCGA GCGTCAGGTG
CAGGCCGCAC TAGCCGTCCT CATGAAAAAT AGAACCACCC TGGTCATCGC CCATCGGCTC
AGCACCATTG AACACGCTGA TTGCATTTTG GTACTGGACC AAGGGCGCAT CGTTGAGACG
GGCACCCACG CCGAGCTGCT ACGGGCTGGC AGCTATTACG CCAACCTGAG TCGGCTGCAG
GGATGA
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| Protein sequence | MTKPISLSNR ALYARLLSYV RPYWKAVFLA VIGMVGTAAT EPVFPAIMKY LLDNGFQAKD
ARMVWLIPMG IVTLFLVRSV IVYCTGYLMT WISSRLVTDL RRTMFAKLLA LPTHHYDEHS
AGQMISRLVY DVSNVTDAAT SALITLVRES LTAIALIGYL LYLDWKLTLI TLAIGPVIAF
TVKSFSKRMR AASQKSLQAM RFISHTIEET ISAQQVVKIF GGQERQQKQF FEATEQFRRA
QMREAIPASA MTPITHIAAS VAVAIIAFLA LSQSTGQAGA SAGSFISFIT AMLMLISPVK
QLATVNPTIQ RGLAASESIF ELLDAAQEDD RGKRQLLRSK GEICFDNVSL RYLGAERFAL
NDISFRITAG QTVALVGASG GGKSTISALI PRFYPVTSGR VLVDGIDIND ITLASLRQNI
ALVSQNVILF NDTVGANIAY GSLQTCSRDD VIRAARAANA WDFIEQLPNG LDTPIGENGA
KLSGGQRQRL AIARALLKDA PILILDEATS ALDTESERQV QAALAVLMKN RTTLVIAHRL
STIEHADCIL VLDQGRIVET GTHAELLRAG SYYANLSRLQ G
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