| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2064 |
|---|
| Symbol | |
|---|
| ID | 3962111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2234832 |
|---|
| End bp | 2236331 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637916884 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT |
|---|
| Protein accession | YP_523320 |
|---|
| Protein GI | 89900849 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATC ACCGCTCACA AACACTGCCC ATGAAGACTC CTCACCTTTC CCTCGCACGA
CCGGTGACGC ATGGCCTGGC CCTGGCCGCG GTGGCCGCAG CCGCCCTGCT GGCGGGTTGC
TCGATGATGC CGGCCTACGA GCGCCCCGCA GCGCCCATCG CTGCCCAATG GCCCGATGCC
TCGACCGCGA CGAAGAACCA GGCCAGCACG CCCGCCGCCG ATCTGGCGTG GCAGGACTTC
GTCGGCGACA CGCCCTTGCG CGAGCTGATC CGCCTGGCGC TGGCGAACAA CCGCGACCTG
CGCGTGGCCG TGCTCAATAT GGAACAGGTG CGTGCGGCCT ACCAGATCCG CCGCGCTGAT
CAGTTTCCCA CCCTGAACCT GGCGGCCACC GGCCTGCGTC AGCCCAGTAC CAATGGCAGC
GGTGGCATCA GCAGCGTCTA TACCGCAGGC CTGGCGATGG CGTCGTGGGA AATCGACTTT
TTTGGCCGCG TCGCCAGCCT GAAGGAATCG GCACTCGCGC AGTACCTGGC TTCAGATGAG
GCGCGCCAGG CGGCGCAGAC CAGTCTGATC GCCGCCGTGG CCAACACCTG GCTGAGCCTG
CAGACCAACG ACGAATTGCT GGCGTTGACG CAGCGCACGC TGGTCACGCG CGACGATTCG
CTGCGCCTGA CCAAGCTGCG CCTGGACAAC GGCGCCGCCT CGGCACTGGA CTTCCGCCAG
GCCGAATCGC TGACGGCGCA AGCGCGCGCC ACCCTGGCCC AACAGCGGCG CCTGCGCGCG
CTGGACGTGA ACGCGCTCAC CCTGCTGGTG GGGCAGCCGC TGCCCGACAC GCTGCTGGCC
ACCTCGGCCA CTGCACCGGT TTTCCGCGAC ATGCCGGCCG GGCTGCCGTC CGACCTGCTG
ACGCGCCGCC CGGACATCCG CCAGGCCGAG CAGCAGCTGA TCGCGGCCAA TGCCAGCATT
GGGGCGGCAC GCGCAGCGTT CTTCCCGCGC ATCTCGCTGA CCGCCAGTGC CGGCAGCGCC
AGCAGCGAGC TCTCCGGCCT GTTCAAAAAC GGTTCCTGGG GTTGGACGCT GGCGCCGCAA
GCACTGTTGC CGATCTTTGA CGCCGGGCGC AACCAGGCCA ATCTGGATGC CAGCAACGCG
GGCCGCGACA TCGCCGTGGC GCAGTACGAA AAGGCGATCC AGAGCGCCTT CCGCGAAGTG
GCGGACGCGC TGGCCGGGCG CGCCACGCTG GACGAGCAGG TGCAAGCCCA GCAAGTGCAG
CTTGACGCTG AAGCCGACCG CTTCCGCCTG GCCGACCTGC GTTACCGCAA TGGCGTTGCC
AGTTACCTGG ACATACTGGA CGCGCAACGC TCGCTGTTTG CCATCCAGCA GGGCGTGGCG
CAAACCAAAC TCGCGTATTT GCAGAACCAG GTCACCTTGT ACAAGGCGCT GGGAGGCGGT
GCATCCGACC GGGATGCGGT AGAAAAATCG GCGCTGCAAA AGAAGGAAGT TAGACCATGA
|
|---|
| Protein sequence | MNNHRSQTLP MKTPHLSLAR PVTHGLALAA VAAAALLAGC SMMPAYERPA APIAAQWPDA
STATKNQAST PAADLAWQDF VGDTPLRELI RLALANNRDL RVAVLNMEQV RAAYQIRRAD
QFPTLNLAAT GLRQPSTNGS GGISSVYTAG LAMASWEIDF FGRVASLKES ALAQYLASDE
ARQAAQTSLI AAVANTWLSL QTNDELLALT QRTLVTRDDS LRLTKLRLDN GAASALDFRQ
AESLTAQARA TLAQQRRLRA LDVNALTLLV GQPLPDTLLA TSATAPVFRD MPAGLPSDLL
TRRPDIRQAE QQLIAANASI GAARAAFFPR ISLTASAGSA SSELSGLFKN GSWGWTLAPQ
ALLPIFDAGR NQANLDASNA GRDIAVAQYE KAIQSAFREV ADALAGRATL DEQVQAQQVQ
LDAEADRFRL ADLRYRNGVA SYLDILDAQR SLFAIQQGVA QTKLAYLQNQ VTLYKALGGG
ASDRDAVEKS ALQKKEVRP
|
|---|
| |