| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2046 |
|---|
| Symbol | dapD |
|---|
| ID | 3963184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2214350 |
|---|
| End bp | 2215174 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916866 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_523302 |
|---|
| Protein GI | 89900831 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAAC AACTGCAATC CATCATCGAC GCGGCCTGGG AAGACCGTGC CAATCTGTCC
AGCGCCGCCG CCCCCAAAGA AGTGCTTGAT GCGGTCGAGC ACGTCATCTC CGACCTCAAC
GCCGGGCGCT TGCGCGTCGC CACCCGCGAG AGCGTGGGCC AATGGACCAC GCACCAGTGG
ATCAAAAAAG CCGTGCTGCT GAGCTTTCGT CTCACCGACA ACCAGGTCAT GAAAGCCGGT
GACCTGGGCT TTTATGACAA GGTGCCAACC AAATTTGCCC ACCTCGACGA AGAAGCCATG
AAGGCCTCGG GCGTGCGTGT GGTGCCACCG GCGGTGGCGC GGCGCGGCAG TTACCTGGCC
AAGGGCGTGA TCCTGATGCC CTCCTACGTC AACATCGGCG CCTATGTCGA TGAAGGCACG
ATGGTCGACA CCTGGGCCAC CGTGGGCTCC TGCGCGCAGA TCGGCAAGCA TGTGCACCTG
AGCGGCGGCG TTGGTATTGG CGGCGTGCTG GAGCCAATGC AGGCCGGCCC CACCATCATC
GAGGACAACT GCTTCATCGG CGCCCGCTCC GAGGTGGTGG AAGGCGTGAT CGTGGAAGAA
AACTCGGTCA TCTCGATGGG CGTTTACCTC GGGCAAAGCA CGCCCATTTA TGACCGCGCC
ACCGACACCG TGAGCTATGG CCGCATCCCC AGCGGCTCGG TTGTCATCAG CGGAAGCCTG
CCCAAGAACG AGGGCAAATA CAGCCTGTAC GCGGCCATCA TTGTCAAACG GGTGGATGCA
CAGACACGGG CCAAAACCAG CTTGAACGAC CTGCTGCGCG ACTGA
|
|---|
| Protein sequence | MTQQLQSIID AAWEDRANLS SAAAPKEVLD AVEHVISDLN AGRLRVATRE SVGQWTTHQW
IKKAVLLSFR LTDNQVMKAG DLGFYDKVPT KFAHLDEEAM KASGVRVVPP AVARRGSYLA
KGVILMPSYV NIGAYVDEGT MVDTWATVGS CAQIGKHVHL SGGVGIGGVL EPMQAGPTII
EDNCFIGARS EVVEGVIVEE NSVISMGVYL GQSTPIYDRA TDTVSYGRIP SGSVVISGSL
PKNEGKYSLY AAIIVKRVDA QTRAKTSLND LLRD
|
|---|
| |