Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_2006 |
Symbol | |
ID | 3962230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 2161639 |
End bp | 2164935 |
Gene Length | 3297 bp |
Protein Length | 1098 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637916826 |
Product | carbamoyl-phosphate synthase, large subunit |
Protein accession | YP_523262 |
Protein GI | 89900791 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism |
COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.488825 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAAAC GTACCGACAT CAAAAGCATC CTCATCATTG GCGCCGGCCC GATCATCATC GGCCAGGCTT GCGAGTTTGA CTACTCTGGT GTGCAGGCCT GCAAGGCGTT GCGCGAAGAA GGCTTCAAAG TCATTCTGAT CAACAGCAAC CCGGCCACCA TCATGACCGA CCCGGCCACG GCGGACGTCA CCTACATCGA GCCGATCACC TGGCAGACGG TTGAAAAAAT CATCGCCAAG GAGCGTCCCG ATGCGATCCT GCCGACCATG GGCGGTCAGA CCGCGCTGAA CTGTGCGCTC GACCTGTGGC ACCACGGCGT GCTGGAAAAG TACAACGTCG AATTGATTGG CGCCAAGCCC GAGGCCATCG ACAAGGCCGA AGATCGCCTG AAGTTCAAGG ACGCCATGAC CAAAATTGGT CTGGGTTCGG CCCGCTCCGG CATTGCCCAC AGCATGGAAG AAGCCTGGGG CGTGCAAAAG ACGGTGGGTT TCCCGACCGT GATCCGGCCC AGTTTCACGC TGGGCGGCAC TGGTGGCGGC ATTGCCTACA ACTCGGAAGA ATTCGAAGTC ATCTGCAAGC GCGGTCTGGA GGCGTCGCCG ACCAATGAGC TGCTGATTGA AGAATCGCTG CTCGGCTGGA AAGAGTACGA GATGGAGGTG GTGCGCGACC AGGCTGACAA CTGCATCATC ATTTGTTCCA TTGAAAACCT GGATCCGATG GGTGTGCACA CGGGCGACTC GATCACGGTC GCGCCGGCGC AGACGCTGAG CGACAAGGAG TACCAGATTC TGCGCAACGC CAGTCTGGCC GTGCTGCGCG AAATCGGCGT CGATACCGGT GGCTCCAACG TGCAGTTTTC CATCAACCCC GAAGATGGGC GCATGGTGGT GATCGAGATG AATCCGCGCG TCAGCCGCTC CTCGGCGCTG GCTTCCAAGG CTACTGGTTT TCCGATTGCC AAGATCGCCG CCAAACTCGC AGTCGGTTAC ACGCTGGACG AATTGCGCAA TGACATCACG GGCGGGGCCA CACCCGCCAG CTTTGAGCCG AGCATTGACT ACGTGGTGAC GAAGATTCCG CGTTTCGCGT TCGAAAAATT CCCGGCGGCC GACAGCCGCC TGACGACGCA GATGAAATCG GTCGGTGAAG TGATGGCGAT GGGGCGCACC TTTCAGGAGT CGTTCCAGAA AGCCCTGCGT GGCCTCGAAG TTGGCGTCGA TGGCATGAAT GAGAAAACGC AGGACCGTGA AGTACTGGAA AAAGAGTTGG GCGAGCCCGG CCCCGAGCGT ATCTGGTACG TGGGCGACGC GTTTGCCGCC GGCTGGAGCG TGGACGAGGT GTTTGAGCTG ACCAAAATTG ACCGTTGGTT TCTGGTGCAG ATTGAGCAGA TCGTCAAGAT TGAGCTGGAG ATTGAGCGCT TGCCCGCGCC GGAACAGGGC TCCGCGCTGG ATGCGATGGA CGGCGCGACC TTGCGCGCTT TGAAGCAAAA AGGATTTTCC GATCGGCGCC TGGCCAAGCA GTTCAAGACC ACCGACACGG CTGTGCGTGA GAAGCGCCAC GCCCTGGGTG TGCGCCCGGT CTATAAGCGT GTTGACACCT GCGCGGCCGA GTTCGCCACC AACACGGCGT ATCTGTACTC GACCTATGAG TCGTCCAGCC CGTTCGACAC CGGTAGCGAG TGCGAGGCCG ATCCCACGGA CCGGAAAAAA ATCATGGTGC TCGGCGGTGG CCCGAACCGC ATTGGCCAGG GCATTGAGTT TGACTACTGC TGTGTGCATG CGGCGCTGGC GATGCGCGAG GACGGCTATG AGACCATCAT GGTCAACTGC AACCCCGAGA CTGTGTCGAC CGACTACGAC ACCTCGGATC GTCTCTATTT CGAGCCGGTC ACGCTGGAAG ACGTGCTTGA AATTGTGGAC AAGGAAAAGC CCTATGGCGT GATCGTGCAG TACGGGGGCC AGACACCACT CAAACTGGCG TTGGCGCTGG AAGCCAACGG CGTGCCCATC ATCGGCACCT CGCCTGACAT GATTGACGCC GCCGAAGACC GTGAGCGCTT TCAGAAGTTG CTGCATCAAC TCGGGCTTCG TCAACCTGCC AACGCGACTG CCCGCACCGA GCCCGAGGCG CTTGAAAAAG CGGCCGCGCT GGGCTACCCG CTGGTGGTGC GACCGAGCTA TGTGCTGGGT GGCCGGGCCA TGGAAATTGT GCATGAGCAG CGCGACCTGG AGCGCTACAT GCGCGAGGCG GTCAAGGTCA GCCACGATTC GCCGGTGCTG CTGGACCGTT TCTTGAATGA CGCCATTGAG TGCGATGTGG ACTGTGTGCG CGACGCGCAG GGGCAGACCT TCATCGGCGG CGTCATGGAA CACATTGAAC AGGCGGGCGT GCACAGTGGC GACTCGGCCT GCTCGCTGCC GCCCTACAGC TTGTGTGCCG AAACAGTGAC AGAGATCAGG CGGCAAACGG CGGCCATGGC CGAGGCCTTG AACGTGGTCG GCTTGATGAA CGTGCAGTTC GCCATTCAGA CCCTGGAGGG CGCTGACGTT ATTTTTGTGC TGGAAGTCAA TCCAAGAGCG TCCCGCACCG TGCCCTTTGT GTCCAAAGCC ACCGGTGTTC AGTTGGCCAA GGTGGCGGCC CGCTGCATGG TCGGTCAGTC GCTCGCCTCT CAGGGCATCG GGACGGAAGT GACGCCACCC TATTTCAGCG TGAAAGAAGC GGTGTTCCCC TTTGTCAAAT TTCCCGGCGT TGATACCATT CTTGGCCCCG AGATGAAGTC CACTGGCGAG GTGATGGGCG TGGGCAAGAC TTTTGGCGAG GCCTTTGTGA AGTCTCAAAT CGGGGCCGGC ACCAAATTGC CACGGCCGCG CACCCCCTCG GGCGAGCCTG CGGGCAAGGT GTTCATCTCG GTCAAAAACA ACGACAAACC CCGTGTCATT GAGGTCGCGC GTGATCTGGT GGAACTGGGG TTCACGCTGC TGGCAACCAA GGGAACGGCC TTGGCCATCA ACGCGGCCGG TGTGAGCTGT GCCACGGTTA ACAAGGTGAC CGAAGGGCGC CCCAACATTG TGGACATGAT CAAGAACCAG GAAATTGCGC TGGTCATCAA TACAGTGGAA GAGCGGCGCA ATGCGATCGC GGACTCGCGT CATATTCGCA CCTCGGCTTT GTTCGGGCGG GTAACCACCT TCACGACCAT TGCCGGCGCC GAGGCGGCCG TGCAGGGAAT GCGCTACATG GACGACCTGA GTGTTATTTC GATCCAGGAA ATGCATGCCC AGTTGGCGGG TGCTTGA
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Protein sequence | MPKRTDIKSI LIIGAGPIII GQACEFDYSG VQACKALREE GFKVILINSN PATIMTDPAT ADVTYIEPIT WQTVEKIIAK ERPDAILPTM GGQTALNCAL DLWHHGVLEK YNVELIGAKP EAIDKAEDRL KFKDAMTKIG LGSARSGIAH SMEEAWGVQK TVGFPTVIRP SFTLGGTGGG IAYNSEEFEV ICKRGLEASP TNELLIEESL LGWKEYEMEV VRDQADNCII ICSIENLDPM GVHTGDSITV APAQTLSDKE YQILRNASLA VLREIGVDTG GSNVQFSINP EDGRMVVIEM NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDELRNDIT GGATPASFEP SIDYVVTKIP RFAFEKFPAA DSRLTTQMKS VGEVMAMGRT FQESFQKALR GLEVGVDGMN EKTQDREVLE KELGEPGPER IWYVGDAFAA GWSVDEVFEL TKIDRWFLVQ IEQIVKIELE IERLPAPEQG SALDAMDGAT LRALKQKGFS DRRLAKQFKT TDTAVREKRH ALGVRPVYKR VDTCAAEFAT NTAYLYSTYE SSSPFDTGSE CEADPTDRKK IMVLGGGPNR IGQGIEFDYC CVHAALAMRE DGYETIMVNC NPETVSTDYD TSDRLYFEPV TLEDVLEIVD KEKPYGVIVQ YGGQTPLKLA LALEANGVPI IGTSPDMIDA AEDRERFQKL LHQLGLRQPA NATARTEPEA LEKAAALGYP LVVRPSYVLG GRAMEIVHEQ RDLERYMREA VKVSHDSPVL LDRFLNDAIE CDVDCVRDAQ GQTFIGGVME HIEQAGVHSG DSACSLPPYS LCAETVTEIR RQTAAMAEAL NVVGLMNVQF AIQTLEGADV IFVLEVNPRA SRTVPFVSKA TGVQLAKVAA RCMVGQSLAS QGIGTEVTPP YFSVKEAVFP FVKFPGVDTI LGPEMKSTGE VMGVGKTFGE AFVKSQIGAG TKLPRPRTPS GEPAGKVFIS VKNNDKPRVI EVARDLVELG FTLLATKGTA LAINAAGVSC ATVNKVTEGR PNIVDMIKNQ EIALVINTVE ERRNAIADSR HIRTSALFGR VTTFTTIAGA EAAVQGMRYM DDLSVISIQE MHAQLAGA
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