| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2003 |
|---|
| Symbol | |
|---|
| ID | 3962227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2158741 |
|---|
| End bp | 2159535 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916823 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_523259 |
|---|
| Protein GI | 89900788 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCGC CAGAGGTTCA GCACATCACG TCGCGCGACA ACGCTTTTCT CAAAGACCTG
CGTCGCCTGG CGCAAGATAA CACCGGCTAT CGGAAACAGG GCCGGTTCTG GGCCGAGGGT
GAGCACCTGG GTGCTGCCGC ACTGGCCCGT CATGTGACGC CCGCCATCGG TGTTTTTTCA
GAGTCATTTT GGCCTCTAGC CCCCGCGAAA TATGCGCAGG CAGCTATAAA AAGTATAGTT
ATCCCGGATT CCTTGTTCGC GGCGATCAGT GGCCTTGAGT CACCCGCCCA GATGGGCTTT
GTCTTTGATT TGCCGCTGGT GGCGGCTTTG CAGCCGGTCA TGGCGTCGGT TATTCTGGAC
CGGGTGCAAG ACGCAGGCAA TGTCGGATCG ATTCTGCGCA GTGCCTCAGC CTTCGGCTTC
AAACAAGTCA TCGCCTTGAA AGGTACGGCT GCGCTGTGGA GCCCCAAAGT GCTGCGCGCC
GGTATGGGCG CGCATTGGGG TTTGCAATTG ATCGAAGGCG TGGCGCTGGC TGATCTGGCG
CTACTGGCCG TGCCGATCGT GGTGACCAGC TCGCATCGGG GCTCCTATTT GCATCAGGCG
ATCGCCAATC AGGCGCTGCC GATGCCCTGC GCCTGGGCGC TGGGGCACGA AGGGCAGGGC
GTCAGCGCCG AGTTGGAGGC GCTGGCCCGC TTGCATGTGC GTATTGCCCA GCCCGGCGGT
GAAGAGTCTC TTAACGTCGC TGCCGCCGCT GCCATTTGCC TGCATGCCAG TGCGGCAACC
TCCTTGGTGG GGTGA
|
|---|
| Protein sequence | MSAPEVQHIT SRDNAFLKDL RRLAQDNTGY RKQGRFWAEG EHLGAAALAR HVTPAIGVFS
ESFWPLAPAK YAQAAIKSIV IPDSLFAAIS GLESPAQMGF VFDLPLVAAL QPVMASVILD
RVQDAGNVGS ILRSASAFGF KQVIALKGTA ALWSPKVLRA GMGAHWGLQL IEGVALADLA
LLAVPIVVTS SHRGSYLHQA IANQALPMPC AWALGHEGQG VSAELEALAR LHVRIAQPGG
EESLNVAAAA AICLHASAAT SLVG
|
|---|
| |