| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1983 |
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| Symbol | |
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| ID | 3964339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 2134593 |
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| End bp | 2138654 |
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| Gene Length | 4062 bp |
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| Protein Length | 1353 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637916803 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_523239 |
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| Protein GI | 89900768 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.103002 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTGA ATATCTTTCA GTCACACTCG CTCAAGGCCC GCGTGACCCT CTTTTCGCTG
ACAATTTTTG TGCTCAGTAT CTGGGCGCTG GCGCTGTTTG CCAGTCGCAT GTTGCGCGCG
GACATGCAGC AGCAATTGGG GGACCAGCAA CTGGCGAGCG TGACTGGGGT GGCGGCAGGG
ATCAGTCACA AATTGGAAGA ACGTTTGGTA GCACTGGATC AGGTGGCCGA ACGCATGGAT
CCGGCCCTGC TGCGTCATGA CGCCGCACTG CAAGAATTCC TGGAGGCACA GCCGGTTTTT
CGCGGTCTAT TCAATGCCGG CGTCATCGTC ACCACGCTGG ACGGCACGGT CAGCCACGCG
GTGCCGTTCG CCAAGGAACG GATCGGCGTT ACTACCCTGG CGATCGGGGC GATTGCCGCC
GCGCTGCGGC AGGGGCGCAC AACGGTCGGT CAGCCGGTGA TGGACAAGGC GCTGCCAGCG
CCACTGATCA CCATGGCGGC GCCCATTCGC AATCCACAGG GCCAGGTGAT CGGGGCTCTG
GCTGGCATGA TCAATCTAAC ATTGCCTAAT CTGCTGGACC CGATCAGCCA GGGCCGTTAT
GGCAAGACTG GCAGCTATCT GCTGGTTGCG CGACCAGCCC GGATGGTGAT CACCAACACC
GACAAAAAAC GGGTCATGGA GGCAGCGCCT GCGCCCGGCG TCAACCGCCT GATTGACCGC
TTCATGCAGG GTTATGAGGG TTCCGCAATT TTCGTTGACC CCTTTGAGGT GGAAACACTG
ACCTCGGCCA AGGGCATCAC GCTGGCCGAT TGGTACGTGG CGGCGGCATT GCCCACCGCC
GAAGCCTTTG CACCCATCGA CGCCATGCAG CGGCGTATTG TGCTGGCCAC CGTGCTGCTG
ACCCTGCTGG CGGGCGGCCT GACATGGTGG ATGCTGCGCC GGCAACTGGC GCCGCTGCTC
GCCACCGCCG AAACCTTGGT GGCCCTGCCC ACAGCCCAGA CATTTCCGAT CGCGCTGCCC
GTCGCTCACC CGGACGAAAT TGGCCACTTG ATTGATGGCT TCAATCACCT GCTGGCTCAC
CTGCACCAGC GTGAGACCCT GCTCAAGCAG ATTCTTGACA CCTCCAGCGC CGCCATCTTT
GTCATCGACT CACAGGGCCG CATCACGCAA GCCAACCAGC GCATGGCCGA GATGTTCGGT
TGCCCGCTCG ACACCCTGAT CGGGCATGAC TACGTCAGCC TGGTGCACCC GGCGGAGCGC
AATGTCGGAC AACAGAACAT GCTGGCTTTG CTGGCCAACA AAGTCTCGTC CTCCGATTTG
GAGCGCCTGT ATTGGCGCGC CGACGAATCC GAATTCTGGG GCCACCTGGC GTGCCGCGGC
TTCCACGACG CCAGCACCCA TCAACATTGC TTTGTCGGTG TCATTACGGA CATCACCGAA
CGGATCCAGG TCGGGAAATT CGAGCAACTT CGCAGCCGCA TTCTGGAGCT TCTGGCAAGC
GGTGAGCCAC TGCCCCTCAT TCTTGAAGCC CTGGTGCGCG GCGTGGAGCA ACTCAACCCC
ACCATGCTGT GCAGCATCTT GCTGCTCAGC GGCGACGGCC AGCATCTGGG CCAAGGTGTG
GCGCCGAGTC TGCCCGACTT TTATAACGCG GCCATCGACG GCATTGAAAT CGGCGCCGGT
GCCGGCTCCT GCGGCACGTC CGCCTTTACC GCGGAGCGCG TCATCGTCAG CGACATTGCA
ACCCATGTGT ATTGGCAGCG CTACAAGGAA CTCGCGGCAC GCGCCGACTT GGGCGCCTGC
TGGTCGCAGC CCATTCTTTC CTCCCTGGGC CAGGTGCTGG GAACCTTTGC CAGCTACCAC
CACACCACCC ACACGCCGAC GTCGGCTGAA ATTGCCTCGG TTGAGCGCTT TGCCCGGATC
GCCGCCATCG TGATTGAAGG ACAAGCCGCG GCCAAAAAAA TGCGCGACAG CGAAGAACGT
TTTCGCACCC TGATCGAGGA ATCACCCGCC GCGATCCTGG TCCATCGTGA GCTGCGCATC
ATTTATCTCA ATCCAGCCGC CATCGCGATG TTTGGTGCCC GCACAGCGCA AGAACTGGTC
GGCAAGGCCC TCCTTGATTT GATTCATCCG GATTCCCATC AAGTCGCCAC GGCGCGCGTC
AGGCACATCA CCAACACCGG CCATGCGGCG CCTCTGATCG ATGAAAAATA TCTCAGGCTC
GATGGCACGC CGATTGACGT GGAAGTCCAG AGCACTTCGA TTATTTACGA GGGGCTAGCG
GCCATCCGGA CTGCTTTTCG CGACATCTCC GAGCGCAAAC TGGCGCACGA CAAGCTGCAA
CTTGCGGCCA ACGTCTTCAG CCATGCCCGC GAGGGCATCG CCATCACCGA CGCACGCGCC
ACCATCATTG ATGTCAATGA GGCTTTTTGC CGCATCACCG GCTACAGCCG GGACGAAGTG
CTGGGCCAGA ACCCGCGAGT GCTGGGCTCG GGCCGCCAGG ACAAGGCGTT TTACGCCGCC
ATGTGGCACG ACCTGGGCGA ACAAGGCCAT TGGTACGGTG AAATCTGGAA CCGGCGCAAA
AACGGCGAGT TGTACCCCGA GATGCTCACC ATCAGCGCCG TGCGCACGGA CCAGGGCCAG
GTCCAGAACT ATGTCGCGCT GTTTTCCGAC ATCAGCGCCA TCAAGGCGCA CCAACACGAG
CTCGAACACA TTGCCCACTT TGACGCCCTC ACCAACTTGC CCAACCGGGT GCTGCTGGCC
GACCGCTTGC AGCAAGCCAT GGCGCAGGCG CAGCGCCGTG GCCAGATGCT GGCGCTGGCC
TACCTCGACC TCGACGGCTT CAAGGCCATC AACGACCGCC ATGGCCATGA AGCCGGCGAT
CTGCTGCTCA TGACAGTCGC CACCCGCATG AAGCAGACCC TGCGCGAGGG CGACACGCTG
GCGCGCATTG GTGGCGACGA GTTCGTGGCG GTGCTGCTCG ATCTGAGCGA CAGCAAGGCC
AGCGCGCCCA TGCTCAGCCG CTTGTTGGCG GCGGCGGCCG AACCGGTGCG CCTGGGCGAT
CTGGCGCTGC AAGTTTCGGC CAGCCTGGGT GTGACCTTTT ATCCGCAGGT CGATGAGATG
GAAGCTGACC AGTTGCTGCG CCAGGCCGAT CAGGCCATGT ACCAGGCCAA GCTGGCGGGC
AAAAACCGCT ACCACTTTTT TGACGCGGCA CAAGACCGCA GCGCGCGCGG ACATCATGAG
AGCCTGGAGC GCATCCGCCA GGCGCTTGAC CGACGTGAAT TCGTGCTCTA TTACCAGCCC
AAGGTCAACA TGCGCACCGG CGCCGTGATT GGTGCTGAAG CGCTGATTCG CTGGCAACAT
CCCGAAAAAG GGCTGCTTGC CCCGGCCCTG TTTTTGCCCG TGATCGAGGA TCATCCGCTG
GCCGTCGATA TTGGCGAGTG GGTGATCGCC ACCGCGCTGA TCCAGAACGA GCTTTGGCAG
GCCGACGGGC TGGACATGCC GATTAGCGTC AACGTCGGCG CACGCCAGCT CCAGCAGGCC
GACTTCGTGC CACGCCTGCG CGAGCTGCTG GCCGCACAAC CCGGGGTCAA GCCGTTTCAG
CTGGAAATCG AGGTGCTGGA GACCAGTGCC CTCGAAGACT GGGTTGGCGT GTCGCAATCG
ATTGAAGAAT GCCGGGAAAT GGGGGTGCTG TTTGCCCTGG ACGATTTTGG TACCGGCTAT
TCGTCGCTGA CCTACCTCAA ACGTCTGCAA GTCGATCTGC TCAAGATTGA CCAGAGCTTT
GTGCGCGACA TGCTCGACGA CCCCGACGAC ATGGCCATTT TGCAGGGTGT TATCGGCCTG
GCCGGTGCGT TTCGGCGCAA CGTCATTGCC GAAGGTGTGG AGACCATTGC CCACGGCACC
TTGCTGCTGC AACTGGGCTG CGATCTGGGG CAAGGCTTCG GCATTGCGCG GCCCATGCCC
GCCGACCTCT TTCCGGCCTG GGCGGCAAGC TGGCAGCGCG ATGCAGCCTG GGTTGCCGCG
GGCGGCACGG ACCACCCGTC GCTCATGGCA ACCCTTCAAT AG
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| Protein sequence | MDLNIFQSHS LKARVTLFSL TIFVLSIWAL ALFASRMLRA DMQQQLGDQQ LASVTGVAAG
ISHKLEERLV ALDQVAERMD PALLRHDAAL QEFLEAQPVF RGLFNAGVIV TTLDGTVSHA
VPFAKERIGV TTLAIGAIAA ALRQGRTTVG QPVMDKALPA PLITMAAPIR NPQGQVIGAL
AGMINLTLPN LLDPISQGRY GKTGSYLLVA RPARMVITNT DKKRVMEAAP APGVNRLIDR
FMQGYEGSAI FVDPFEVETL TSAKGITLAD WYVAAALPTA EAFAPIDAMQ RRIVLATVLL
TLLAGGLTWW MLRRQLAPLL ATAETLVALP TAQTFPIALP VAHPDEIGHL IDGFNHLLAH
LHQRETLLKQ ILDTSSAAIF VIDSQGRITQ ANQRMAEMFG CPLDTLIGHD YVSLVHPAER
NVGQQNMLAL LANKVSSSDL ERLYWRADES EFWGHLACRG FHDASTHQHC FVGVITDITE
RIQVGKFEQL RSRILELLAS GEPLPLILEA LVRGVEQLNP TMLCSILLLS GDGQHLGQGV
APSLPDFYNA AIDGIEIGAG AGSCGTSAFT AERVIVSDIA THVYWQRYKE LAARADLGAC
WSQPILSSLG QVLGTFASYH HTTHTPTSAE IASVERFARI AAIVIEGQAA AKKMRDSEER
FRTLIEESPA AILVHRELRI IYLNPAAIAM FGARTAQELV GKALLDLIHP DSHQVATARV
RHITNTGHAA PLIDEKYLRL DGTPIDVEVQ STSIIYEGLA AIRTAFRDIS ERKLAHDKLQ
LAANVFSHAR EGIAITDARA TIIDVNEAFC RITGYSRDEV LGQNPRVLGS GRQDKAFYAA
MWHDLGEQGH WYGEIWNRRK NGELYPEMLT ISAVRTDQGQ VQNYVALFSD ISAIKAHQHE
LEHIAHFDAL TNLPNRVLLA DRLQQAMAQA QRRGQMLALA YLDLDGFKAI NDRHGHEAGD
LLLMTVATRM KQTLREGDTL ARIGGDEFVA VLLDLSDSKA SAPMLSRLLA AAAEPVRLGD
LALQVSASLG VTFYPQVDEM EADQLLRQAD QAMYQAKLAG KNRYHFFDAA QDRSARGHHE
SLERIRQALD RREFVLYYQP KVNMRTGAVI GAEALIRWQH PEKGLLAPAL FLPVIEDHPL
AVDIGEWVIA TALIQNELWQ ADGLDMPISV NVGARQLQQA DFVPRLRELL AAQPGVKPFQ
LEIEVLETSA LEDWVGVSQS IEECREMGVL FALDDFGTGY SSLTYLKRLQ VDLLKIDQSF
VRDMLDDPDD MAILQGVIGL AGAFRRNVIA EGVETIAHGT LLLQLGCDLG QGFGIARPMP
ADLFPAWAAS WQRDAAWVAA GGTDHPSLMA TLQ
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