Gene Rfer_1978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_1978 
Symbol 
ID3964334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp2124591 
End bp2126252 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content59% 
IMG OID637916798 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_523234 
Protein GI89900763 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.260474 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGCGC TGGCCAGACT GATGCTCGAC AACAGCCCCG AGATGGTGCT GTTGGTCAAC 
CCGGCAACAC TGCAGATCAT GATGGCCAAC GCGTCGGTGG TCAAGACACT GGGCTACTCG
CTGGCGCAGT TGCAGGGCTT GGCGATCACC GAGATTGAAA GTGCGCTACA GGATGTTTTT
TATTGGGAGG ACGTTCGAAC TGGCCAGTGT CTTGAAGTAC AGAGTCAGGA GGGGCAGTAT
CGCTGCGCGC AGGGAGAACT TTTGACGGTC AGCAAGTCAA TTCGGCTGCT TGACCAAGAC
GGGGCGCCTC TGCTGCTGGT GCAGGCCGTG CAGACCCGCA ATGAGCGCAA GGCGGAGGAC
GCGCTGGCAC AAACCTTGTC GCAGTTGCGA GCCACGCTGG AGTCCACTGG CAATGGCATC
CTGGTCATTG GCTGGCAAGG CCGGATCGAG AGTATGAACC GCCTGTTTGG CAAGATGTGG
GAGATTTCTG ACGATCTGCT CGACTCGCAT GACGATGCGC GCATTCTGGG TTTTGTGGCC
GGGCGTGTCA TCGAGTCCGG GCTGCTTCAC GCGCGACTGG GTGCGATCGT GGACAAGCGC
GAGACCGAAG ACCTGCTGCA CCACCAGGAC GGTCGCGTGT TCGAGGTCAG CTCGCGTCCG
CAGTACCTGG GTGAGCAGAT TATCGGCCGC GTGTTTGGTT TTCAGGACAT CACCCAGCGC
ACGCTGGCCG AAGCCGCATT GCGTGAATCG CGCGACTTGC TGGAACAAAG GGTGCGATCC
CGAACAGCCG ACTTGAATAC CGCCAATGAG ACGCTGCAGC AGGAAAAGGA GCGCCAGGCC
ATTTTGATCA AGCGACTGGA AGAGGCGCAA AACCAGCTGC TGCAATCGGA GCGCATGGCG
TCCATCGGCC AACTGGCGGC CGGCGTCGCG CATGAAATCA ACAATCCGGT GGGGTTTGTC
AACTCCAATC TGGGCTCCTT GCAGCGCTAT GTCACCGACA TGCTCAGGTT GCTGTCGGTC
TACGAGAAGG CTGAAGGCGC CCTCCCTGGG GCGGCGACGC AAGAGATAAA CCAGGTCAAG
GCGGACATTG ATGTCGAGTT CCTGCGCGAA GACGTCGCCA ACTTGCTCGT CGAATCGCTG
GACGGGCTCA AGCGCGTCAC GCGCATCGTG CAGGACTTGA AAGATTTTTC TCATGTGGAT
GAATCAGAGC GCCAGTGGGC CGACCTGGAG GCCGGGCTGG AGAGCACCTT GCGCGTGGTC
TGGAACGAGC TCAAGTACAA GGCCGAGGTG ATCAAGGAGT TTGCAGGTAT TCCGCAAGTC
GAATGCTTTG CTTTTCAGCT TAACCAGGTG TTCATGAACC TCTTGATCAA CGCCTCGCAC
GCCATTGAAG GGCGTGGCAC CATTGCCATC CGCACCGGGC ACGACGACGC CTGTGTGTGG
GTGGAAGTGC AAGACAGCGG CCGCGGCATC CAGCCGGAGC ATCTGTCCCG GATTTTTGAA
CCGTTCTTCA CGACCAAACC AGTCGGCCAA GGCACCGGGC TGGGCCTTTC ACTGGCTTAC
GGTATTGTCA AAAAACACGA TGGGCGCATT GAGGTCAAGA GCGAATTGGG ACAGGGGACG
GTGTTCAGGG TGATCCTGCC CAAGAAAACC AAGACACTAT AA
 
Protein sequence
MNALARLMLD NSPEMVLLVN PATLQIMMAN ASVVKTLGYS LAQLQGLAIT EIESALQDVF 
YWEDVRTGQC LEVQSQEGQY RCAQGELLTV SKSIRLLDQD GAPLLLVQAV QTRNERKAED
ALAQTLSQLR ATLESTGNGI LVIGWQGRIE SMNRLFGKMW EISDDLLDSH DDARILGFVA
GRVIESGLLH ARLGAIVDKR ETEDLLHHQD GRVFEVSSRP QYLGEQIIGR VFGFQDITQR
TLAEAALRES RDLLEQRVRS RTADLNTANE TLQQEKERQA ILIKRLEEAQ NQLLQSERMA
SIGQLAAGVA HEINNPVGFV NSNLGSLQRY VTDMLRLLSV YEKAEGALPG AATQEINQVK
ADIDVEFLRE DVANLLVESL DGLKRVTRIV QDLKDFSHVD ESERQWADLE AGLESTLRVV
WNELKYKAEV IKEFAGIPQV ECFAFQLNQV FMNLLINASH AIEGRGTIAI RTGHDDACVW
VEVQDSGRGI QPEHLSRIFE PFFTTKPVGQ GTGLGLSLAY GIVKKHDGRI EVKSELGQGT
VFRVILPKKT KTL