| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1891 |
|---|
| Symbol | |
|---|
| ID | 3962269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 2027833 |
|---|
| End bp | 2030331 |
|---|
| Gene Length | 2499 bp |
|---|
| Protein Length | 832 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637916711 |
|---|
| Product | NADH:flavin oxidoreductase/NADH oxidase |
|---|
| Protein accession | YP_523148 |
|---|
| Protein GI | 89900677 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCT ACCCCCACCT GCTTAGCCCC CTCGACCTGG GCTTTACCAC CCTGCCCAAC
CGGGTGCTGA TGGGCTCCAT GCACGTCGGG CTGGAAGAAG CCAAAGACGG CTTTGCCCGC
ATGGCCGCGT TCTACGCCGA GCGTGCGGCG GGTGGTGTCG GCCTGATCGT GACCGGTGGC
ATTGCCCCCA ACGACCGCGC CCGCCCGATG CCGGGCGGTG CGCGCCTGAC GACCGAAGAA
GAAGCCGCCA AACACAAAGT GGTCACACAG GCCGTGCATG ACGCCGGCGG CAAGATTGCG
ATGCAAATCC TGCACTTTGG CCGCTACGCC TACCACCCCG ATCTGGTGGC GCCCAGTGCA
TTGCAAGCCC CGATCAACCC ATTCCGCCCC AACCCGCTCT CTACCGACGA AGTGGTGCAA
ACCATTGACG ACTTTGTGCG CTGCGCGGCA CTGGCGCAAT CGGCCGGTTA CGACGGTGTC
GAAATCATGG GCTCCGAAGG CTATCTGCTC AACGAGTTCG TCGCCGCGCG CACCAACCAG
CGCGATGACG AATGGGGCGG CAGTTATGAG AACCGCATTC GCTTTCCGCT CGAGATCGTG
CGCCGCACAC GCGAGCGCGT CGGCAAGAAC TTCATCATCA TCTATCGCCT CTCGATGCTC
GACCTGGTGG AAGGCGGCTC GACGCTGGAC GAGGTGGTGC AACTGGCGCA AGCGATCGAG
GCGGCCGGTG CCACCATCAT CAACACCGGC GTGGGCTGGC ACGAGGCACG CATCCCCACC
ATTGCGACCA AAGTGCCCCG TGCTGCCTGG GCCTGGGTCA CGAAAAAGCT CATGGGCAAG
GTCGGCATTC CGCTGGTCGC CACCAACCGC ATCAACACGC CCGACGTGGC CGAGCAGTTG
CTGGCTGACG GTTTCTGCAA CATGGTGTCG ATGGCGCGCC CCTTCCTGGC CGACCCGCTG
TTTGTGCGCA AAGCCGAACA GGGCAAGGCG GACGAGATCA ACACCTGCAT CGGCTGCAAC
CAGGCCTGCC TGGACCACAC GTTTGGCGGC AAGATCACCT CCTGCCTGGT GAACCCGCGC
GCCTGCCATG AGACGCTGCT CAACATCGTG CCCGCCAAGA CGCGCGGCAG CATCGCGGTG
GTGGGCGCAG GCCCGGCCGG TTTGGCCTTT GCCATCACCG CCGCGCAACG CGGCTTTGAG
GTCACGCTGT TTGACGCAGC ATCCGAGATT GGCGGCCAGT TCAACATCGC CAAGCAGGTG
CCGGGCAAGG AAGAGTTTGT CGAGACCCTG CGCTTCTTTG GCCGCCAGAT TGAACTGACC
GGCGTGAAGC TGAAACTCAA TGCCCGAGTC AGCGCGCAGG AGCTGCTCAA AGGTGGCTAC
ACCCATATCG TGCTGGCCAC AGGTGTCACA CCGCGCACAC CGGCCATCGA GGGCATCGAC
CATCCGAAAG TGGTGGGCTA CCTGGACGTG CTGCGCGACA AGTGCGCCGT GGGCCACACC
GTGGCGCTGA TTGGCGCGGG CGGCATCGGC TTTGACGTGG CTGAATTTCT GCTGCACAGC
GGCACCAGCC CGAGTCTGGA CCCGACCAAG TTTTTCGCCG AGTGGGGCGT GGACACCAAC
TACAGCACGC GCGGCGGCTT GACAGCACCA CACATTGAAA AGAGCCCGCG CAAGGTTTAC
CTGCTGCAGC GCAAGACCAG CAAGGTGGGC GACGGCCTGG GCAAGACCAC CGGCTGGATT
CACCGCACGT CACTGAAGAA CCGCCAGGTC GAGATGCTGG CGGGCGTGAC TTACCGCAAG
GTGGACGACG CCGGCCTGCA CATCACCGTG GATGAGCGCG AGATGACCAT TCCCGCCGAC
ACCGTGGTGA TCTGCGCCGG CCAGGACCCG CAGCGCGAAT TGCAGGCTGC GCTGGCGGCC
GCCGGCTGCA GCGTGCACCT GATCGGCGGC GCCGACAAGG CCGCCGAACT GGACGCCAAA
CGCGCCATCA AACAGGGCAC CGAGCTGGCC GTGGCACTGG AAGGCGCAGG CACCGGGGCC
GACACCGCGC CCGCTGCGAA ACAGCAACAA GGCGTGCAAC CCGCCGTGGC GGCTTCGCTA
AAAAAGTGGC ACACCATGGT GGCCCAAGGT GATGTGAGCG AGCTCTCCAG CATCCTGCAC
CCCAAGGCCG TCTTTCGCTC GCCCATGGCG CACACGCCGT ACGCCAGTGC GCAGGCGGTG
CAACTCATTT TGGGCACCGT GGTCAAGGTG TTTGAAGACT TCAGCTACCA CCGCGAGCTG
GCCAGCGCGG ACGGTCTGAG TGTGGTGCTG GAATTCAGCG CCCGGGTGGG CGACAAGGCG
CTCAAGGGCA TCGACCTGAT TCAATTCGAC GCCGAGGGGA AAATCGTTGA CTTTGAAGTC
ATGGTACGCC CCATGAGCGG CCTGCAAGCG CTGGGCGATG AAATGGGCAA GCGTCTGGCG
CCTTATCTAA GCGCCTACAA AGCTGCCAAA ACCCAATAA
|
|---|
| Protein sequence | MSTYPHLLSP LDLGFTTLPN RVLMGSMHVG LEEAKDGFAR MAAFYAERAA GGVGLIVTGG
IAPNDRARPM PGGARLTTEE EAAKHKVVTQ AVHDAGGKIA MQILHFGRYA YHPDLVAPSA
LQAPINPFRP NPLSTDEVVQ TIDDFVRCAA LAQSAGYDGV EIMGSEGYLL NEFVAARTNQ
RDDEWGGSYE NRIRFPLEIV RRTRERVGKN FIIIYRLSML DLVEGGSTLD EVVQLAQAIE
AAGATIINTG VGWHEARIPT IATKVPRAAW AWVTKKLMGK VGIPLVATNR INTPDVAEQL
LADGFCNMVS MARPFLADPL FVRKAEQGKA DEINTCIGCN QACLDHTFGG KITSCLVNPR
ACHETLLNIV PAKTRGSIAV VGAGPAGLAF AITAAQRGFE VTLFDAASEI GGQFNIAKQV
PGKEEFVETL RFFGRQIELT GVKLKLNARV SAQELLKGGY THIVLATGVT PRTPAIEGID
HPKVVGYLDV LRDKCAVGHT VALIGAGGIG FDVAEFLLHS GTSPSLDPTK FFAEWGVDTN
YSTRGGLTAP HIEKSPRKVY LLQRKTSKVG DGLGKTTGWI HRTSLKNRQV EMLAGVTYRK
VDDAGLHITV DEREMTIPAD TVVICAGQDP QRELQAALAA AGCSVHLIGG ADKAAELDAK
RAIKQGTELA VALEGAGTGA DTAPAAKQQQ GVQPAVAASL KKWHTMVAQG DVSELSSILH
PKAVFRSPMA HTPYASAQAV QLILGTVVKV FEDFSYHREL ASADGLSVVL EFSARVGDKA
LKGIDLIQFD AEGKIVDFEV MVRPMSGLQA LGDEMGKRLA PYLSAYKAAK TQ
|
|---|
| |