Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1887 |
Symbol | |
ID | 3962265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 2024915 |
End bp | 2025898 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637916707 |
Product | diguanylate cyclase |
Protein accession | YP_523144 |
Protein GI | 89900673 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.876301 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACCTG AAAAACTCGA TGGCGGCGCG AGCTGGCCAC TGATCCTTGA CGCCGTGGAG CTGGGTCTGG TGCTGGTGGA CGCCGACGCG CGCGTGTTGC TGTGGAACGC CTGGCTGGCC CGCCACAGCG GGGTGAGCGC CCAGACAGCC CGCGGTCAGC CCTTGGCCGG CGTGTTTGGC GCGGGCCTGT CGGCCTCTTT TCTGACCGCG TTGAGCAACA CCCTGCGCTA CAGACTGCCG GTGGTGCTGT CCAATGTGCT GCACTTTTGC CCCCTGCCCC TGTACGCGCA GACACCAGCA GACGCAGCGG CCGCCCGGAT GCCGCACGCC ATCACCATGA CACCATTGGT GCTGCCCCCA TGGGGTGCCT GTTGTCTGAT TCAGATCACC GATTCCAGCC GGGCAATTTC CCGCGAAAAA GTACTTCAAA GGCAATCAGA ACGTCTCAAC CGCGAGGTGA TGACCGACAG TCTCACACGC GCCTTCAGTC GGGGCTTTTT CGACCATTTC TACCAGCAGG AATTCGCGCG GGCGCAAAGA AAAGGAACCA AGCTGTCGCT CATCATGATC GACGTGGATT ACTTCAAGGA CTACAACGAT GCATATGGTC ACCCTGCCGG CGACAAGGTG CTCATTGCCG TGGTACAGGC CCTTCAGGCC GTCCTGTTGC GTTCAACCGA CAAGCTGGCC CGCTATGGGG GTGAAGAGTT TGCCGTCATA CTGCCCGACT GCGGTGAGCA CAAAGCGTTG GCAATTGCCG AACTGCTCCG GACCGCGGTT CTGGCGCTCA ATCTGCCGCA TCGAAAATCC GCCATATCGA ACCAGCTCAC CGTCAGTCTG GGCACCTCCA CCCTGAAAGC TGGCCAAACC AGCAGCGCAC AAGCGCTGCT GGATGCGGCT GATCAGGCCC TGTACGCCGC CAAGAACCAG GGGCGCAACT GCGTGCAGAG CCGCAGTCCA CAGACCGTCG CAGCGCCTGC CTGA
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Protein sequence | MEPEKLDGGA SWPLILDAVE LGLVLVDADA RVLLWNAWLA RHSGVSAQTA RGQPLAGVFG AGLSASFLTA LSNTLRYRLP VVLSNVLHFC PLPLYAQTPA DAAAARMPHA ITMTPLVLPP WGACCLIQIT DSSRAISREK VLQRQSERLN REVMTDSLTR AFSRGFFDHF YQQEFARAQR KGTKLSLIMI DVDYFKDYND AYGHPAGDKV LIAVVQALQA VLLRSTDKLA RYGGEEFAVI LPDCGEHKAL AIAELLRTAV LALNLPHRKS AISNQLTVSL GTSTLKAGQT SSAQALLDAA DQALYAAKNQ GRNCVQSRSP QTVAAPA
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