| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1721 |
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| Symbol | |
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| ID | 3964020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1860331 |
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| End bp | 1861371 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637916544 |
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| Product | pseudouridine synthase, RluD |
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| Protein accession | YP_522981 |
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| Protein GI | 89900510 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACACA TTATAGGGGG CAATCCAGTC CCACCGGCAC CTCAGGCTAC AACGATACGC
GTCGACGAAG ACGCGGCTGG GCAGCGCCTG GATAATTTCC TGATGCGTCA CCTCAAGGGT
GTACCGAAAA CCCATGTCTA CCGCATCATT CGCAGTGGTG AAGTCAGGGT GAACAAAGGT
CGGGCCTCTG CCGATGCACG GTTGGCGGCG GGTGATACCG TGCGTTTGCC GCCGCTGCGA
ATTTCCGAGC GGGTGGCGGA AAAGGCCGAG GCCATGACAC AAGCCATGGC CCATGGAGCG
CCGGCGCGCG ACTTTCCCAT TTTGTTTGAA GATGAGCAAC TGCTGGTGAT TGACAAACCG
GCCGGCGTGG CCGTGCACGG TGGTTCGGGC GTGAGTTTTG GCGTGATCGA ACAATTGCGC
ATGGCCAGGC CCGAGGCCAA ATTTCTGGAA CTGGTGCACC GCCTGGACCG GGACACCAGC
GGCATTTTGT TGATTGCGAA AAAGCGCAGC GCGTTGACCC GGCTGCAAAG CCAGTTTCGC
GAGCGCGAAA CCGGCAAGAC CTATCTGGCC TTGGTGGCAG GGCACTGGCC AGCCAACCGA
AAAGTGCTGG ACAAGCCGCT CTATAAATAC CTGCTGCCAG GCAAGGACGG CAGTGCGGGC
GAGGGCGAAC GGCGCGTCAA GGTGGTGTCC CGGGATGATC CCAACGGCAT GCCGTCGGTG
ACGCTGGTGA AAGTCAGGGA GACGACGGCG ACCAGTTTTA CCTTGCTTGA AGTCACTATC
AAGACCGGGC GCACGCATCA GATCCGGGTT CATCTTGCCA GCGAGGGCTA TCCGATTGCA
GGTGACGATA AATATGGCGA CTTTGGGCTG AATAAGAAAT TACTGCAGTC CGGGCCCCGG
CCCGGCCTCA AACGCATGTT TTTGCATGCC TGGCGCTTGC AGTTCAACCA TCCCGCCAGC
GGCGAGCGAA TGGAACTGCT GGCGCCCCTA CCGACTGAAC TTGAGGCTTT TTCCGACCAT
GCCGCACCTT CTTCATCCTG A
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| Protein sequence | MKHIIGGNPV PPAPQATTIR VDEDAAGQRL DNFLMRHLKG VPKTHVYRII RSGEVRVNKG
RASADARLAA GDTVRLPPLR ISERVAEKAE AMTQAMAHGA PARDFPILFE DEQLLVIDKP
AGVAVHGGSG VSFGVIEQLR MARPEAKFLE LVHRLDRDTS GILLIAKKRS ALTRLQSQFR
ERETGKTYLA LVAGHWPANR KVLDKPLYKY LLPGKDGSAG EGERRVKVVS RDDPNGMPSV
TLVKVRETTA TSFTLLEVTI KTGRTHQIRV HLASEGYPIA GDDKYGDFGL NKKLLQSGPR
PGLKRMFLHA WRLQFNHPAS GERMELLAPL PTELEAFSDH AAPSSS
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