| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1558 |
|---|
| Symbol | |
|---|
| ID | 3963265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 1682914 |
|---|
| End bp | 1685265 |
|---|
| Gene Length | 2352 bp |
|---|
| Protein Length | 783 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637916381 |
|---|
| Product | sigma 70 (RpoD) |
|---|
| Protein accession | YP_522821 |
|---|
| Protein GI | 89900350 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.990853 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCTC AAAACACCAA GAAGCCTGTC CCGTCCGCTG CCAAACCGGT TGCCAACGCA
AAGCCTGCAA AAGCAGTGCC AGCAGTGCCG CCTAAATCCA CCACCCAAAA GCCAACTACG
AAAGAAAAAT TAGTGATCGC ATCCAAGTCC CCTGCCAAAG CACCGTCGGT TGAATTGAAG
AAGGCTGTTC CTGCGGCAGT TGTGGCTGAA GTCATTATCA AGAAAAAGCC GGGCCGACCG
CCCAAAGCCG CTGCTGTCGA ATCCGACACC GAGTCAAAAC CAGGGGCCAA GCGAGGGCGC
AAGGCAAAAA ATGCGACTGA GTTGACCAGC ACGGACGATC TGGATATGGC TGACATTGAA
GCCGATCTGG TTGGCGAGCC GGTAGCGACA GGTGAAAAGG TTAAACCTTT GCGCATGAAG
ATCAGCAAGG CCAAAGAGCG TGCGCTGATG AAAGAGTTTG GCCTGGACGA AACGGTACTG
TCCGAAGAAG ACATGGCCAA GCGCCGTCAA CGCCTCAAGG CCCTGATCAA GCTCGGAAAG
ACACGCGGCT ATTTGACGCA TGGTGAAATT TCCGATCACC TGCCCGACAA ACTTGTCGAC
GCTGAAACGC TTGAGGTCGT GATCTCAATG CTCAACGACA TGGGTGTGGC GGTGTATGAG
CAAACGCCGG ACGCCGAGAC ACTGCTGCTC AACAACAACG TCTCGACTGC AGCCACCGAA
GAAGAAGCCG AAGAAGAGGC CGAGGCCGCG CTGTCCACAG TGGACAGCGA GTTTGGCCGC
ACCACCGACC CGGTGCGCAT GTACATGCGT GAAATGGGCA CGGTGGAGTT GTTGACACGC
GAAGGTGAAA TCGAAATCGC CAAGCGCATC GAAGGTGGCT TGATGGCCAT GATGGAGGCG
ATTTCGGCCT CCCCTGCCAC CATCGCCGAG ATTCTTCGCC TGAGTGAAGA CATCCGCGAA
GGCAAGGTCG TCATCACCAC CATCGTGGAC GGTTTTTCCA ACCCGAATGA AGCCGACGAC
TATGTGGCCG AGGAAGATTT TGACGAGTTC GATGCGGCCG ACGATGACGA CGGCAAAGGT
GGCTCCAAGG CATTGACAAA AAAACTGGAA GAGCTCAAAA ACGAAGCACT GAGCCGTTTC
GACAGACTGC GTGAGCTGTT TGAGAAAATC CACACGATCT ACAACAAGGA AGGCTACGGT
ACACCGAGCT ATATCAAGAC ACAGAAAGCC TTGTCTGAAG AGCTGATGTC GATCCGATTT
ACCGCCAAAA CCATTGAAAA GCTGTGCGAC CTGGTGCGCT CTCAAGTGGA CGATGTCCGC
AAAAAAGAAC GCGAACTGCG CCGGATCATC GTTGACAAAT GCGGCTACCC GCAAGAAAAC
TTCATCGCCG ATTTCAGCGG GCGCGACAAG CACGGCAACA AGGTGGCCAG CCAGTTGTTA
AATTTGAAGT GGATCGAAAA GCAGGCGGCC TCCGGCAAGC ACTGGGGTCC CATCATGGCC
CGCAACATTC CACCGGTGCA GGACCTGCAG CAGAAGTTGA CCGACCTGCA ATCCAAAGTC
GTGGTGCCGC TGGACCAACT CAAGGACATC AACAAGCGCA TGAACGAAGG CGAGTACTCA
TCGCGCGCGG CCAAGAAGGA AATGATTGAA GCCAACTTGC GGCTGGTGAT TTCCATCGCC
AAAAAATACA CCAACCGCGG CCTGCAGTTC CTGGACTTGA TCCAGGAAGG CAACATTGGC
TTGATGAAGG CAGTCGACAA ATTTGAATAC CGTCGCGGCT ACAAGTTCTC GACCTACGCC
ACCTGGTGGA TTCGTCAGGC CATCACGCGC TCGATCGCTG ACCAGGCCCG CACCATCCGC
ATCCCGGTGC ACATGATCGA AACCATCAAC AAGATGAACC GTATCAGCCG TCAGCACCTG
CAGGAATTTG GCTTTGAGCC TGACGCCAGC GTGTTGGCCG AGCGCATGGA GATCCCGGAA
GACAAGATCC GCAAAATCAT GAAGATCGCC AAGGAACCGA TCTCGATGGA AACACCCATT
GGGGACGATG ACGATTCTCA TTTGGGCGAC TTCATTGAAG ACGCCGCCAA TACCGCACCG
ATGGAAGCGG CCATGCAAGC CGGTCTGCGC GACGTGGTGA AAGACATTCT GGACAGTCTG
ACGCCGCGCG AAGCCAAGGT GTTGCGCATG CGTTTCGGCA TCGAGATGAC CAGTGACCAC
ACGCTGGAAG AAGTCGGCAA GCAATTCGAC GTGACGCGCG AGCGCATCCG TCAAATTGAA
GCCAAAGCAC TGCGCAAGCT CAAGCACCCT TCGCGCTCGG ACAAGCTGCG CAGCTTCACT
GACAACCTTT AG
|
|---|
| Protein sequence | MPAQNTKKPV PSAAKPVANA KPAKAVPAVP PKSTTQKPTT KEKLVIASKS PAKAPSVELK
KAVPAAVVAE VIIKKKPGRP PKAAAVESDT ESKPGAKRGR KAKNATELTS TDDLDMADIE
ADLVGEPVAT GEKVKPLRMK ISKAKERALM KEFGLDETVL SEEDMAKRRQ RLKALIKLGK
TRGYLTHGEI SDHLPDKLVD AETLEVVISM LNDMGVAVYE QTPDAETLLL NNNVSTAATE
EEAEEEAEAA LSTVDSEFGR TTDPVRMYMR EMGTVELLTR EGEIEIAKRI EGGLMAMMEA
ISASPATIAE ILRLSEDIRE GKVVITTIVD GFSNPNEADD YVAEEDFDEF DAADDDDGKG
GSKALTKKLE ELKNEALSRF DRLRELFEKI HTIYNKEGYG TPSYIKTQKA LSEELMSIRF
TAKTIEKLCD LVRSQVDDVR KKERELRRII VDKCGYPQEN FIADFSGRDK HGNKVASQLL
NLKWIEKQAA SGKHWGPIMA RNIPPVQDLQ QKLTDLQSKV VVPLDQLKDI NKRMNEGEYS
SRAAKKEMIE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY RRGYKFSTYA
TWWIRQAITR SIADQARTIR IPVHMIETIN KMNRISRQHL QEFGFEPDAS VLAERMEIPE
DKIRKIMKIA KEPISMETPI GDDDDSHLGD FIEDAANTAP MEAAMQAGLR DVVKDILDSL
TPREAKVLRM RFGIEMTSDH TLEEVGKQFD VTRERIRQIE AKALRKLKHP SRSDKLRSFT
DNL
|
|---|
| |