| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1556 |
|---|
| Symbol | |
|---|
| ID | 3960546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1678911 |
|---|
| End bp | 1681352 |
|---|
| Gene Length | 2442 bp |
|---|
| Protein Length | 813 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637916376 |
|---|
| Product | ATP-dependent protease La |
|---|
| Protein accession | YP_522819 |
|---|
| Protein GI | 89900348 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0466] ATP-dependent Lon protease, bacterial type |
|---|
| TIGRFAM ID | [TIGR00763] ATP-dependent protease La |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGGTC ATACCCATTT GCCTGCTACT CCTTTGGATT TGCCATTGCT GCCACTGCGT
GACGTGGTCG TGTTTCCGCA CATGGTGATT CCACTTTTTG TCGGTCGGCC CAAGAGCATC
AAGGCGCTGG AAGCAGCCAT GGAGTCTGAG CGCCGGATTA TGCTGGTGGC CCAAAAAACG
GCTGCCAAGG ACGATCCGCT GGTCACCGAC ATGTTTGATG TCGGCTGTGT CTCTACCATC
CTGCAAATGC TCAAGCTGCC CGACGGCACG GTCAAGGTGC TGGTTGAAGG CCAGCAGCGC
GCACGTGTCA ACAAAATTGA AGATGGTGAG TTGCATTTTT CAGCCAACGT CACGCCGATT
GAAGTGCTGA TTGAGCCCGA CACCAAATCA CGTGGCAAAG CCAGTGAAAT CGAGGCTTTG
CGCCGTGCCG TGATGCAGCA GTTTGATCAG TACGTCAAGC TCAACAAGAA GATCCCACCT
GAGATTCTGA CCTCTATTTC AAGCATTGAT GATGCAGGCC GCATGGCCGA TACCATCGCC
GCGCATTTGC CGCTCAAGCT CGACAGCAAG CAAGCTGTAT TGGGTCTCTC GGGTGTCAAA
GAACGTCTGG AAAATCTGTT TGAGCAGATC GAGCGTGAAG TTGACATCTT GAATGTTGAT
AAAAAAATCC GGGGCCGCGT CAAGCGGCAG ATGGAGAAGA ATCAGCGCGA TTTCTACCTG
AATGAACAGG TGAAAGCGAT TCAGAAAGAA CTGGGTGAAG GTGAAGATGG CGCCGACATC
GACGAAATTG AGAAAAAAAT CAAGTCGGCC AAAATGCCCA AAGAAGCGCT GAAAAAGGCG
GAAGGTGAAC TGAAAAAGCT GAAATTGATG TCGCCCATGT CGGCAGAAGC GGCCGTTGTG
CGTAATTACA TTGATGTATT GACCGGCTTG CCGTGGGCCA GCAAAACCAA GATCAAACAT
GATCTTGGCA ATGCAGAAAA GGTGCTCGAC GAAGACCACT ACGGGCTGGA CAAGGTGAAA
GACCGCATTG TTGAGTATCT GGCGGTGCAG CAACGGGTTG AAAAAGTCAA GGCGCCCATT
TTGTGTCTGG TCGGACCGCC GGGTGTTGGC AAGACGTCAT TGGGGCAGTC CATTGCCAAG
GCGACCGGGC GCAAGTATGT ACGGGTGGCC TTGGGCGGCA TGCGCGACGA GGCGGAAATT
CGCGGCCACC GCCGCACTTA TATCGGCGCC ATGCCGGGCA AGGTGATGCA GAGCCTGGCG
AAGGTTGGCA CGCGCAACCC ACTGTTTTTG CTGGACGAGA TTGACAAGCT GGGAACCGAC
TTTCGCGGTG ATCCATCGAG CGCCTTGTTG GAGGTGCTGG ACCCGGAGCA AAACCACAAG
TTTGGTGACC ATTACGTCGA GGTTGATTTT GATTTGAGCG ACGTCATGTT CGTGGCCACG
TCCAACTCCA TGAATATTCC GTCGGCCCTG CTCGATCGCA TGGAAGTGAT TCGCCTGTCT
GGGTATACCG AAGACGAAAA AACCAACATC GCCCTCAAGT ACCTGTTGCC CAAGCAGCTC
AAGAACAATG GTGTCAAGGA AGAAGAGTTG TTGGTTGGCG AAGATGCCGT GCGTGACATC
GTTCGCTACT ACACCCGTGA GGCTGGTGTA CGTTCGCTGG AGCGTGAGCT CTCGAAAATC
TGCCGCAAGG TGGTGAAGGG CCTGTTGCTC AAGAAGATGA CGCCAAAGGT GACGGTGAAT
GCCGACAACC TCAATGATTT TCTGGGCGTT CGCAAGTACG ACTATGGTCG CGCTGAGCAA
AAGAATCAGG TCGGCCAGGT GGTGGGATTG GCTTGGACAG AGGTCGGCGG CGATTTGCTG
ACGATCGAGG CTGCCATGAT GCCCGGCAAG GGTGTCATCA CGCGCACGGG TTCACTGGGC
GACGTGATGA AGGAGTCGGT TGAGGCTGCA CGCACGGTGG TGCGCAGCCG CTCGCGCCGA
TTGGGCATCA AGGACGAGTT TTTCGAAAAG AAAGATATCC ATATTCACGT GCCTGACGGT
GCTACGCCCA AAGACGGCCC GAGTGCTGGT GCCGCGATGA CGACAGCCTT TGTTTCTGCC
ATGACGGGTA TTCCGGTGCG TGGTGATGTG GCCATGACGG GTGAAATAAC CTTGCGCGGG
GAAGTAACTG CCATTGGGGG TCTGAAGGAG AAGTTGTTGG CGGCTTTGCG AGGGGGTATC
AAGACTGTTC TGATTCCCGA GGAGAACGCT AAAGACCTGC AGGATATTCC CGAGAACGTA
AAAAACGGGT TAGAGATTGT GCCCGTGCGC TGGATCGACA AGGTGCTCGA AGTGGCATTG
GAGAGAATGC CGACGCCCCT GTCTGACGAG GACTTGGCGG TGGCCGCCGC TGCACCAGTC
GTGGTGCCGG TGCCTGAGTC GGGAGTGTCC ATCAAGCATT GA
|
|---|
| Protein sequence | MSGHTHLPAT PLDLPLLPLR DVVVFPHMVI PLFVGRPKSI KALEAAMESE RRIMLVAQKT
AAKDDPLVTD MFDVGCVSTI LQMLKLPDGT VKVLVEGQQR ARVNKIEDGE LHFSANVTPI
EVLIEPDTKS RGKASEIEAL RRAVMQQFDQ YVKLNKKIPP EILTSISSID DAGRMADTIA
AHLPLKLDSK QAVLGLSGVK ERLENLFEQI EREVDILNVD KKIRGRVKRQ MEKNQRDFYL
NEQVKAIQKE LGEGEDGADI DEIEKKIKSA KMPKEALKKA EGELKKLKLM SPMSAEAAVV
RNYIDVLTGL PWASKTKIKH DLGNAEKVLD EDHYGLDKVK DRIVEYLAVQ QRVEKVKAPI
LCLVGPPGVG KTSLGQSIAK ATGRKYVRVA LGGMRDEAEI RGHRRTYIGA MPGKVMQSLA
KVGTRNPLFL LDEIDKLGTD FRGDPSSALL EVLDPEQNHK FGDHYVEVDF DLSDVMFVAT
SNSMNIPSAL LDRMEVIRLS GYTEDEKTNI ALKYLLPKQL KNNGVKEEEL LVGEDAVRDI
VRYYTREAGV RSLERELSKI CRKVVKGLLL KKMTPKVTVN ADNLNDFLGV RKYDYGRAEQ
KNQVGQVVGL AWTEVGGDLL TIEAAMMPGK GVITRTGSLG DVMKESVEAA RTVVRSRSRR
LGIKDEFFEK KDIHIHVPDG ATPKDGPSAG AAMTTAFVSA MTGIPVRGDV AMTGEITLRG
EVTAIGGLKE KLLAALRGGI KTVLIPEENA KDLQDIPENV KNGLEIVPVR WIDKVLEVAL
ERMPTPLSDE DLAVAAAAPV VVPVPESGVS IKH
|
|---|
| |