Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_1482 |
Symbol | |
ID | 3964307 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 1594483 |
End bp | 1595157 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637916301 |
Product | tripartite ATP-independent periplasmic transporter DctQ |
Protein accession | YP_522746 |
Protein GI | 89900275 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.149014 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTTC TTGATCACCT GGAAGAGTGG CTGGTCACCT TCCTGATGGG CGCTGCGACG CTGATCATCT TTGTGGCGGT GGTACACCGC TACGCCGCTG GCCTGCCGAT ACCCGGCGTG CAAGACTGGC TCTTGTCCCT CTCCTTGAGC TGGGCGCAGG AGCTGACCAT CATCATGTTT GTCTGGATGG CCAAGTTTGG CGCCGCCTAT GGCGTGCGCA CCGGCATTCA CGTCGGGGTG GACGTGCTGA TCAACCGCAT GCAAGACAAG ATGAAGAGCA AATTCATCGT CTTCGGGCTG TGTGCGGGCG CCCTGTTTAC CGGCATTGTG GCCACCCTGG GTGCCACTTT TGTCTGGGAC AACGGCGCGC ACCATGCCTG GTTCAACCTG TTGGGTTTGT CCGTAGAAGG CATACCCGAA GGTCCCACTA CGCCGGACCT GGAGATGCCA ACCTGGATGG TTTACAGCGC CGTGCCGCTG GGAACCAGCC TGATGTGTTT CCGGTTTTTG CAGGTCATGG TCAATTTTCT TAAAACCGGC GAACTGCCGC ACCACGACCA CGGCCATGTC GAGGGTCTGG AAGCCGAAAC ACCCCCGGTC GACTTCAACC CGCTTGCCAT GGATGACAAC CTGCACCCTT CTGATTTGCA GAACAAAGAA GGGGATTCGA AATGA
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Protein sequence | MKFLDHLEEW LVTFLMGAAT LIIFVAVVHR YAAGLPIPGV QDWLLSLSLS WAQELTIIMF VWMAKFGAAY GVRTGIHVGV DVLINRMQDK MKSKFIVFGL CAGALFTGIV ATLGATFVWD NGAHHAWFNL LGLSVEGIPE GPTTPDLEMP TWMVYSAVPL GTSLMCFRFL QVMVNFLKTG ELPHHDHGHV EGLEAETPPV DFNPLAMDDN LHPSDLQNKE GDSK
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