| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1354 |
|---|
| Symbol | |
|---|
| ID | 3960508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1457772 |
|---|
| End bp | 1458986 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637916171 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_522619 |
|---|
| Protein GI | 89900148 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.226935 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTGA CTGATACCGC CATCAAGAAG GCCAAGCCGG GCGACAAGCC TGTGAAACTG
AGCGACGGCA AGGGCCTGTA CTTGCTGGTT AATCCCGTTG GCTCGAAGCT GTGGCGCTGG
AAATACCGGT TTCTGGGCAA AGAGAAGGTC ATGTCGCTGG GCGCTTACCC GGACGTTTCC
CTTGCCCAGG CGCGTGATGG CATGGGCGCG GCGCGCAAGT TATTGGCCAG CGGCACGGAC
CCTATGGCGC AACGGGCTAC CGACAAGATC ACGAAGCAGG CATCCGCTGA AAACTCTTTC
CAGTCCGTGG CCTTGCTGTG GTGGGACCAC TGGCATGGTG CCAAGAGTGC GCGGCATGCG
GATGATGTGA TGCGTCGCCT CAAGGCTGAT GTGTTCCCCG CCATTGGGGC GCGCCCGGTG
TCGGAGATAC AGGCACATGA GCTGGTGGGA ATGGTGCAGA CGATTTCAAA GCGCGGGGCC
TTGGATATTG CCAAACGGGC TTTGCAGACC TCTGGACAGG TTTTCCGGTA CGCGGTGGCC
CATGGCCTTG CCCAACGCAA CCCGGCCAGC GACATCAAGC CCAGTGATGT GCTGGCGTCC
CGCAAGGCCG CCAACTACGC GCGTATCAGC GCCAAGGAGC TGCCCGAGTT GCTGCGGCAC
ATCGAAGGCT ATGCGGGCGC TGCCGTGACG CGCTTGGCCA TGAAGTTGAT GGCGCTGACC
TTTGTTCGCA CGTCGGAGCT GATCGGCGCA CGCTGGGCCG AGTTTGACTT GGAAGCGCGG
CGCTGGGACA TTCCCGCTTC GCGCATGAAG ATGAAAACGC CGCACATCGT GCCGCTGTCC
ACCCAGGCGG TGAACGTGCT GCAAACGCTG CAACTGGTGT CGGGGCGCGG CACGCTGCTG
TTTCCGGGCG AGCGCGACCA CGAAAAGTCC ATGAGCAACA ACACCATTTT GGGTGCGCTG
GACCGCATGG GCTACAAGGG GCGCATGACC GGCCACGGAT TCCGTGGCGT GGCTTCCACG
TTGCTGCATG AAATGGGTTT TGACCATGCC CACATTGAAT TGCAACTGGC GCACCAGGAA
CGCAACGAGG TGAGCGCGGC CTACAACCAC GCGACCTACC TCAAGCAGCG GACCAAGATG
ATGCAGCACT GGGCGGACTA CCTGGATAGC TGCACGACGG GCCAGGTGCT GGCGTTTCAA
CGTGCCGCAG CGTGA
|
|---|
| Protein sequence | MSLTDTAIKK AKPGDKPVKL SDGKGLYLLV NPVGSKLWRW KYRFLGKEKV MSLGAYPDVS
LAQARDGMGA ARKLLASGTD PMAQRATDKI TKQASAENSF QSVALLWWDH WHGAKSARHA
DDVMRRLKAD VFPAIGARPV SEIQAHELVG MVQTISKRGA LDIAKRALQT SGQVFRYAVA
HGLAQRNPAS DIKPSDVLAS RKAANYARIS AKELPELLRH IEGYAGAAVT RLAMKLMALT
FVRTSELIGA RWAEFDLEAR RWDIPASRMK MKTPHIVPLS TQAVNVLQTL QLVSGRGTLL
FPGERDHEKS MSNNTILGAL DRMGYKGRMT GHGFRGVAST LLHEMGFDHA HIELQLAHQE
RNEVSAAYNH ATYLKQRTKM MQHWADYLDS CTTGQVLAFQ RAAA
|
|---|
| |