| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1102 |
|---|
| Symbol | |
|---|
| ID | 3963486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 1180574 |
|---|
| End bp | 1181920 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637915923 |
|---|
| Product | Beta-glucosidase |
|---|
| Protein accession | YP_522374 |
|---|
| Protein GI | 89899903 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase |
|---|
| TIGRFAM ID | [TIGR03356] beta-galactosidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.1825 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCTC TTATGACCAC TACATCCAAC TCCGCATTTC CCAAAAATTT CGTCTGGGGC
GTCGCCACCA GCGCATTCCA GATCGAGGGT GCATCCGAAG CCGATGGCAA GGGCCCTTCC
ATCTGGGACG ACTTCTGCCG TATTCCCGGT GCCATCCAGG ACGCCAGCGA TGGCCGGGTG
GCCTGCGATC ACTACCACCG TTGGGCGGCG GACCTGGATC TGATCGCCGG CCTGGGCGTC
GATGCCTACC GCTTTTCCGT GTCCTGGCCG CGGGTGCAGC CCCTGGGCTC GGGTGCCTTC
AATGAAAAGG GCTTCGAGTT CTACGAGCGG CTGGTCGATG GCATGCTGGC GCGGGGCCTC
AAACCTTATC TGACGCTGAA CCATTGGGAC CTGCCGTCTG CCCTGCAGGC CACCGGTGGC
TGGGAAAACC GCGACACGGT GCAGCGCTTT GTTGACTATG CCTGTGAAGT GGCGCGCCGC
CTGGGCGATC GCGTCGTCTC CATCTGCACG CACAACGAGC CCTGGGTGGT GGCGGTGCTG
GGCAACCAGA TTGGCAACTT CGCCCCCGGC ATCAAGAGCC GTGCGGTGTC GCTCCAGGTG
GCGCACCATC TGCTCCTGAG TCACGGCAGG GCGCTGACGG CGCTGCGCGA CCAGGGCTGC
AAGAGCGAGC TGGGCATCGT GCTCAACCTG GCGCCGACCC ATGCGGCCAC CGACTCCGAG
GCGGACCAGG CCAAGGCGCG GCTCGACGAC GGCACCGGCC TGCGCTGGTA TCTGGACCCG
CTGCTCAAGG GCGAGTATCC GGCCGACGTG CTGGCCCATC TGGGCGCGGA CGCCCCCAAG
GTGTTGCCGG GCGATCTGGC ACTGATCAAG GTCCCGCTGG ATTTTCTCGG CATCAACTAC
TACATGCGCA GTGTCTCCAG CGCAGGCGAA CCCTGGGACG TCAAGTCCAG CGGGCGCGAG
ATCACCGACA TGGGCTGGGA GGTCTACCCG CAAGGCCTGA CCGAGTTGCT GCTGCGCCTG
CACCATGACT ACACCATGCC GCCGATCTAC ATCACTGAAA ACGGCGCCGC GTTCCAGGAC
GAAGTGGTGG ACGGCCGGGT GCACGACCTG CGGCGCCAGA CCTACATCGC CAACCATATC
GAAGCGGTGG CAGAGGCCAT GCGCCAGGGC GTGCGCGTGA ACGGCTATTT TGTCTGGAGC
CTGCTGGACA ACTTCGAGTG GGCCTCGGGC TACGCCAAGC GCTTTGGCAT CGTGCGGGTG
GACTACGACA CGCAAGAGCG CACGCTCAAG GACAGTGCGC TTTGGTACCG TGCTTTTCTG
TCTGAACAAA AAAGAAAAGG AATGTGA
|
|---|
| Protein sequence | MIALMTTTSN SAFPKNFVWG VATSAFQIEG ASEADGKGPS IWDDFCRIPG AIQDASDGRV
ACDHYHRWAA DLDLIAGLGV DAYRFSVSWP RVQPLGSGAF NEKGFEFYER LVDGMLARGL
KPYLTLNHWD LPSALQATGG WENRDTVQRF VDYACEVARR LGDRVVSICT HNEPWVVAVL
GNQIGNFAPG IKSRAVSLQV AHHLLLSHGR ALTALRDQGC KSELGIVLNL APTHAATDSE
ADQAKARLDD GTGLRWYLDP LLKGEYPADV LAHLGADAPK VLPGDLALIK VPLDFLGINY
YMRSVSSAGE PWDVKSSGRE ITDMGWEVYP QGLTELLLRL HHDYTMPPIY ITENGAAFQD
EVVDGRVHDL RRQTYIANHI EAVAEAMRQG VRVNGYFVWS LLDNFEWASG YAKRFGIVRV
DYDTQERTLK DSALWYRAFL SEQKRKGM
|
|---|
| |