Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_0895 |
Symbol | |
ID | 3963611 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 935309 |
End bp | 937414 |
Gene Length | 2106 bp |
Protein Length | 701 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637915723 |
Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_522174 |
Protein GI | 89899703 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCTGC CAGGCTCTCT CTGCGCCAAC AAGGGCCGGA TTCTGGTCGT GGAAGACGAA ATGATCGTTG CGCGTGACAT CGCGCAACAA TTGGTGGCAC TCGGTTATCA GGTGGTGGGC CATGCCACGC GGGGGCAAGA AGCCATTGAT CTGGCCGGGG CACTGCAGCC GGAGCTGGTG TTGATGGACA TTCAACTCGC TGGCGCCATG GACGGCATTG CCGCCGCCCA GGCCATCCGC CTGCAATTTT TACTTCCGGT GGTGTTTATC ACCGCTTTTG CCGCCGACGA GGTACTGGCG CGTGCCAAGT TGACGGAACC GTTTGGCTAC ATCCTCAAAC CATTCTCCGA ACGCGAGCTG CGTACCGTGC TGGAGATGGC ACTCTACAAG CATCAGGCCG ACAGCCAGGC ACGCGACGCG GCCCGGCACA CGCAGGCCAT TCTGGACGGT ATGGTCGACG GCGTCATCAC CCTCAACGCG CAGGGCCTGA TAACCTCGAT CAACCAGGCC GTCAGCACCC TGTTTGGTTA TGCGCCCGAG GAACTCCTGG GGCACAACGT CGCGATGCTG ATGCCCAGTC CCCATCGCAG CCTGCATGGC GGCTACCTGC GACGCCATCA GCACACGGGT GCGGGCTGCG CGATGGGCCA AGGGCGAGAG GTCGACGGCC AGCGCCGCGA CGGCAGCGTT TTCCCCATCA GCGTGTCGGT CTCCGAACTC ATGCACAACG GTCAGACTCA GTTCATCGGT CTGGTGCATG ACATCACGCA ACGTCGACGC AGCGAAGAAA ACATCTACCG GCTGGCTTTT TACGACAAGC TCACGGGCCT GCCCAACCGG CGTTTGCTGA TGGACCGCCT CAAGCAAGCG CTCATTACGT CCACCCGAAC GGGTCAGCAC GGCGCCCTGA TCCTGCTCGA TCTGGACCAC TTCAAACAGA TCAATGAGAC GTTCGGTCTC GACGCTGGCG ACGAACTGCT GCAGCAGGTG GGCCAGCGCC TGCCGACTTG CGTGCGGGAC GATGACACGG TGTCGCGTTT CGGTGGCGAC GAATTCATGG TGATGCTTGA AGCCCTGAGC AGCCAGCCTC AGGAGGCGGC AATTCAGGCC GAAGCCATCG CTCAAAAAAT TCTCTTGGCC CTGGCGCAGC CCTACCGATT GCGCGGGCAC ACCCATGGCA CCACACCCAG CATTGGCGTG GTTATGTTCC GGCAGGCGCA AGTCAGCTTG GACGATCTGC TCAAGATGAC TGACGTCGCC ATGTACCAGG CCAAAGCCGC CGGGCGCAAC ACTGTTCGTT TTTTCGACCC CGCCCTGCAA GCGCTGGCGC TGGCGCGCAC CGCGCTGGAA GAAAACCTGC GCCGGGGCCT TGCCCTGCAG GAATTTGTGC TGCACTACCA GATTCAAGTC GACCATCAGG GCCTGCCCAC CGGGGCTGAA GCGCTGCTGC GCTGGCAACA CCCGGTCCGT GGCATGGTGC CGCCGGCCCA GTTCATCCCG CTGGCCGAAG AAACGGGCTT CATCCTCCCT CTGGGCCAAT GGGTTCTGGA GAGCGCCTGC CGACAATTGG TGGCGTGGTC CCACCAGCGG GCAACCGGGT CTTGGACCCT GGCCGTCAAT GTGAGCGCGC TGCAGTTCGC CCAGCCCGAC TTTGTGGCGC ATGTCACCAG CGCGCTGCAG GCCACCAGCG CCAACCCCAC CTTGCTCAAG CTGGAGCTGA CCGAGAGCAT GCTGGTGGGT GATGTGCAGG ACGTCATTAC CAAAATGAAC GCACTCAAAG CGCAAGGCGT GAGCTTCGCG CTCGACGACT TTGGCACCGG CTATTCGTCG CTGTCTTACC TCAAGCGCCT GCCACTGGAC CAGCTCAAGA TTGACCAGTC GTTTGTACGC GATCTTTTGA TCAACCCCAA TGATGCGGTG ATCGCCCAAA CCATCGTGGC GCTAGGCCAC AATCTGGGAC TCCAAGTGAT TGCCGAGGGT GTGGAAACAG TGGGCCAGCA CGACTATCTG GCCAGCATCG GCTGTGACGC CTTTCAGGGT TACTATTTCG GGCGACCGGT GCCAGCGGCA GAACTGGCTT GTCTTCTAAA ACAAATCAGG CCCTAG
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Protein sequence | MSLPGSLCAN KGRILVVEDE MIVARDIAQQ LVALGYQVVG HATRGQEAID LAGALQPELV LMDIQLAGAM DGIAAAQAIR LQFLLPVVFI TAFAADEVLA RAKLTEPFGY ILKPFSEREL RTVLEMALYK HQADSQARDA ARHTQAILDG MVDGVITLNA QGLITSINQA VSTLFGYAPE ELLGHNVAML MPSPHRSLHG GYLRRHQHTG AGCAMGQGRE VDGQRRDGSV FPISVSVSEL MHNGQTQFIG LVHDITQRRR SEENIYRLAF YDKLTGLPNR RLLMDRLKQA LITSTRTGQH GALILLDLDH FKQINETFGL DAGDELLQQV GQRLPTCVRD DDTVSRFGGD EFMVMLEALS SQPQEAAIQA EAIAQKILLA LAQPYRLRGH THGTTPSIGV VMFRQAQVSL DDLLKMTDVA MYQAKAAGRN TVRFFDPALQ ALALARTALE ENLRRGLALQ EFVLHYQIQV DHQGLPTGAE ALLRWQHPVR GMVPPAQFIP LAEETGFILP LGQWVLESAC RQLVAWSHQR ATGSWTLAVN VSALQFAQPD FVAHVTSALQ ATSANPTLLK LELTESMLVG DVQDVITKMN ALKAQGVSFA LDDFGTGYSS LSYLKRLPLD QLKIDQSFVR DLLINPNDAV IAQTIVALGH NLGLQVIAEG VETVGQHDYL ASIGCDAFQG YYFGRPVPAA ELACLLKQIR P
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