| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0850 |
|---|
| Symbol | |
|---|
| ID | 3964073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 886897 |
|---|
| End bp | 888195 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637915678 |
|---|
| Product | lytic murein transglycosylase |
|---|
| Protein accession | YP_522129 |
|---|
| Protein GI | 89899658 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
|---|
| TIGRFAM ID | [TIGR02283] lytic murein transglycosylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCAAA TGCAAATACC ATTCCATTTT CCAGTGTCTG CTCGCTGCTG GCTTGTTCCC
GCGTGGCTGG CGATCGTCTC GGTTGCGGGT TGCGCCTCCG CACCATCAGT CGAGACCCAG
GCACCGCCTG CCTCGACGGT CGGCGCCAAC CCGACGCGAG CCGGGTCCAT TGATGTCGAA
CACAGCCAGA AGTTCGCCCG CTGGGTGCTC GAGTTCAGCA CCACCGCACG CGCAGCCGGC
ATCGATGAGG CCACGCTCCG CAGCGCCTTT GACGACGTGC ACTTCATCCC CCGCGTCATC
GAGTTGGATA GCGCGCAGCC CGAATTCACC CGCACGGTAT GGGACTACCT CGACAGCGCG
CTGTCGACGC GGCGAATCGC CCGTGGCCGG GATAAGCTGC TGCAACTGCA CCCGGTTGTC
GAGCCCATCG CAGCGCGCTA CGGCGTTCCG GCCGAGGTTC TCGTCGCGAT CTGGGGCATG
GAGAGCAATT TCGGCAGCAA CGTGGGCGAC ATCCCGACCA TCGACGCCTT GGCGACGCTC
GGTTTCGAGG GCCGGCGCGA GCAGTGGGCG CGTGGCCAGT TGCTCGCAGC ATTGAGAATC
CTGCAGAACC GTGACATCGA CCGCGCGCAG ATGATGGGTT CGTGGGCCGG CGCGATGGGC
CAGACGCAGT TCCTGCCATC GAACTTTCTG GCCTATGCGG TCGATGCCGA TGCCGATGGC
CGACGCGATA TCTGGAACAG CCTCGCCGAC GTGATGGCCT CGACCGCCAA CTTCCTGGCA
AGCTCCGGAT GGCAGGTCGG CCCGCCGTGG GGGGTGGAGG TGCGCTTGCC GCCGGACTTC
GACTACGCGC GCGCCGACGC CGACCTGCGG CAGCCGACGA CCCAATGGAT GGACGAGGGT
GTGCAAACCA TGGACGGCGC GCCGCTGCCG GCGTTGGCCG ACAGTTCGAT CCTGCTTCCC
GCCGGCGCGC GCGGGCCGGC CTTCCTGGTC GGACCCAACT TCCGCACGAT CCTGCGCTAC
AACAACTCGA CCAGCTATGC GCTCGCTGTC GGCCTGCTGG CGCAACAGCT GGCCGGCGGC
CCCGCGACGC AGGCACCCTG GCCGCGCGAT TTGCAGCTAC TTTCGCGCAG CCAGTTGCTG
GCGCTGCAGA CGGCGCTGAA AGAACGTGGC TTCGACACCG GCACGCCCGA CGGCATGATG
GGCCCGGCCA CACAGCGCGG CGTTCGTCGA TGCCAGCGCA GCCTGGGCCT GCCGGCGGAC
GGCTATCCGA CCCTGGACCT TCTGCAGCGC CTGCAGTGA
|
|---|
| Protein sequence | MEQMQIPFHF PVSARCWLVP AWLAIVSVAG CASAPSVETQ APPASTVGAN PTRAGSIDVE
HSQKFARWVL EFSTTARAAG IDEATLRSAF DDVHFIPRVI ELDSAQPEFT RTVWDYLDSA
LSTRRIARGR DKLLQLHPVV EPIAARYGVP AEVLVAIWGM ESNFGSNVGD IPTIDALATL
GFEGRREQWA RGQLLAALRI LQNRDIDRAQ MMGSWAGAMG QTQFLPSNFL AYAVDADADG
RRDIWNSLAD VMASTANFLA SSGWQVGPPW GVEVRLPPDF DYARADADLR QPTTQWMDEG
VQTMDGAPLP ALADSSILLP AGARGPAFLV GPNFRTILRY NNSTSYALAV GLLAQQLAGG
PATQAPWPRD LQLLSRSQLL ALQTALKERG FDTGTPDGMM GPATQRGVRR CQRSLGLPAD
GYPTLDLLQR LQ
|
|---|
| |