| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0543 |
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| Symbol | |
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| ID | 3960731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 566410 |
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| End bp | 567798 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637915373 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_521825 |
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| Protein GI | 89899354 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTACC CGCTGCCCTA TGCCTTTGCC CGCACCCACC AGCTCCTGCT CGAAGACGAG
GCGGGGGACT TGACGCTGTG CGTGCACCCG GACTCGGGGG GCAGTGCGGT GAGCGAAGTG
ATGCGCAAGT TCCCGGTGCG GCATCTGCAG TCGCTCGGTG CGCAGGCGCT GATTCAGCGC
ATCAGCGCCG CCTATGCCCA GGGCGAATCG AGTGCCGCGG CGGTGGTCAG CGAGGTCGAG
AGCGACGCTG ACCTTACGCG CATGATGCAG GACCTGCCCG CGATTGAAGA CTTGCTGGAG
ACCTCGGACG ATGCGCCCAT CATTCGCATG CTCAATGCGC TCTTGACACA GGCCGCGCGC
GACGGCGCCA GTGACATTCA TATCGAGCCC TATGAGCGCC ATTCGAGCGT GCGCTTTCGG
GTCGATGGCA CGCTGCGCGA GGTGGTGCAA CCCAACCGGG CGCTGCACGC GGCATTGATC
TCGCGCCTGA AGATCATGGC CGAGCTCGAT ATTGCCGAAC GCCGCCTGCC GCAAGACGGC
CGTATCTCGC TGCGTATTGG CACGCGCGCT GTTGATGTGC GTGTCAGCAC CCTGCCCAGC
GCCCATGGCG AGCGCGCCGT GTTGCGACTG CTCGACAAGT CGGAGGGGCG CCTCAGTCTG
GAAGCGCTCG GCATGCAGGG CGAGGTGCTC AAGCGCTTTG AGCATCTGGT GACGCAACCG
CACGGCATCG TGCTGGTCAC CGGTCCCACC GGCTCGGGCA AGACCACCAC GCTGTACGCC
GCCTTGAGCC GGTTAGACGC CAGCCGCAGC AACATCATGA CGGTGGAAGA CCCGATTGAG
TACGAGTTGG CCGGTGTCGG CCAGACCCAG GTCAACGCCA AGATTGAACT CACCTTTGCC
AAGGCTTTGC GTGCCATTTT GCGGCAAGAC CCGGACATCA TCATGATCGG TGAAATCCGC
GATTTCGAGA CGGCCCAGAT TGCAATTCAA GCCTCGCTCA CCGGTCATTT GGTGCTCGCC
ACGCTGCACA CCAATGACGC CACCAGCGCC GTCACCCGTT TGACCGACAT GGGGGTCGAG
CCGTTCTTGC TCAGCTCCAG CTTGCTGGGC GTGTTGGCCC AGCGCCTGCT GCGCAAGCTG
TGCCTGACCT GCCATGGTGC CGGCTGCAGC GCCTGTGGCC AAACCGGCTA CGCCGGGCGC
TCGGGCGTGT TCGAACTGCT GGTCACCGAC GATGCCATTC GCGCCCAGAT CCACGGCCGC
GCGGCGGAAG CCGACATCCG CGCCGCTGCC CTGGCCAGTG GCATGACGCT GATGCGTGAT
GACGGCGAAC GGCTGGTTCG CCTGGGGCTG ACCTCGCGCG AAGAGTTGGT GCGCGTGACG
CGCGACTAG
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| Protein sequence | MRYPLPYAFA RTHQLLLEDE AGDLTLCVHP DSGGSAVSEV MRKFPVRHLQ SLGAQALIQR
ISAAYAQGES SAAAVVSEVE SDADLTRMMQ DLPAIEDLLE TSDDAPIIRM LNALLTQAAR
DGASDIHIEP YERHSSVRFR VDGTLREVVQ PNRALHAALI SRLKIMAELD IAERRLPQDG
RISLRIGTRA VDVRVSTLPS AHGERAVLRL LDKSEGRLSL EALGMQGEVL KRFEHLVTQP
HGIVLVTGPT GSGKTTTLYA ALSRLDASRS NIMTVEDPIE YELAGVGQTQ VNAKIELTFA
KALRAILRQD PDIIMIGEIR DFETAQIAIQ ASLTGHLVLA TLHTNDATSA VTRLTDMGVE
PFLLSSSLLG VLAQRLLRKL CLTCHGAGCS ACGQTGYAGR SGVFELLVTD DAIRAQIHGR
AAEADIRAAA LASGMTLMRD DGERLVRLGL TSREELVRVT RD
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