| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0458 |
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| Symbol | |
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| ID | 3963425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 465204 |
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| End bp | 468317 |
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| Gene Length | 3114 bp |
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| Protein Length | 1037 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637915289 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_521741 |
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| Protein GI | 89899270 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.160814 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACCAT TTCAACAGGG AAGGTTTGTG ATGCCAATTC TCGCTAAGCC CATGCGCCCA
GCCCTGGTTG GCATCGTCGT CTTCCTGCTC GCGGGCCTGG TGGCTGGTGG CCTGGTCTAT
CGCTCGGAGC AGCACCGCCG GCAGCTGGCG CAGTCCCGTG CGCTGGCCAT GGCCGCCGAC
CATGCGCAGT CCTTGCAACA AAATCTGCAG CAAGCCTTGG GTCCGGCGCA ATTCGAGCAG
GTGGTGGCAC GCGGCTATGA CTATGTGCTG TGGCGCATCG ATCCGGCCAG CCAACAGCGC
CAGATCATCG CCCAGTCAGC CAAAGTCCCG CTTGACGCCG TTGATTTTGA ATTGAAAGTT
CCCAACGCCA AGTGGACCCT CAGCGTGGCG CCCACGACGG GTTGGGCAGA CCCGCAGGGC
CTGAGCCTGA AAGTCGCGCT GGCGGCGCTG TTCAGTGTGC TGCTGGCTTA CAGTGCGAAG
CAGGCGGGTG CCGCCAGAGT CCGCGCGAAC GAACTTCAAG TCGACGTCAA TGCGCAGGCA
GTAGAACTCG TGGCGCTCAA CCAGCGGTTG CAGAGCACGC TCGACGCACT GCCCGATCTA
CTCTTTGAAA CGGACATGGA CGGTCGCTAT CTGGCCTACC ATTCGCCGCG CTCTGAGCTG
CTGGGCAAGA CGCTGCATCG GGTGTTGCCG GTTGCGGTGG CAGATATTTG CCTGGCGGCG
GTGCATGAAG CCAATGCAGT CGGCTACTCG CACGGCAAGC AGATCCAGCT AGCCCTGCCG
GACGGCGCGC ATTGGTTCGA GCTCTCCGCT TCACGCAAGC CCGGCCTGCC AGGTGATGCG
CCGACTTTCA TTGTGCTGTC GCGCGACATC ACCGAGCGCA AGAAGGCTGA AATCAAAATT
GAGCGCCTGA CCAAGCTTTA TGCGGCCCTG AGCCAATGCA ACCAGGCCAT CGTCCGCTGC
AGCGATGCCA GTGAATTGTT CCCGATCATT TGCCGGGATG CCGTTAATTT TGGCGGCATG
AAAATGGCCT GGATCGGCAT GCTCGATGAG GCTGACCAGT TGATCAAACC GGCGGCCTCA
TTCGGCAGCG GTGTCGAGTA CCTGGAGGGG ATAGAAATTT CAGTTGATCT GAGCGGCGAC
AAGGGTCGCG GCCCCACCGG CACATCAATT CGTGAAGACC GGCCGTTTTG GTGCCAGGAC
TTCCAGCACG ATGACGCCAC CGCAGCTTGG CATGAACGCG GCGAGCGCTT CGGCTGGGGC
GCCTCGGCGT CGCTGCCCTT GCACCTGAAA GACCGGGTGA TCGGCGCCTT CACACTGTAT
GCGGGTGAAG CGTGTGCCTT TGACGAAGCA GCGCAAAACC TGTTGCTTGA AATGGCGCTT
GACATCAGCT TTGCGCTGGA CCGCTTTGCC GACGAACGTG AGCGCAAGAT CATGCAGGAC
GATTTACGCG ACAGCGAGGA GCGCTATCGC AAAGCGTTCC AGACCAGTCC GGATGCGGTC
AATATCACCC GGCTGGTGGA TGGTCTCTAC GTCGATGTGA ACACGGGTTT TGAGCGCATC
ACCGGCTGGC GGCACGACGA GGTGGTGGGC AAAACCGCCA CCGAACTCAA TCTCTGGGGC
AACCCGGCAG ACCGGATGCG GCTGGTTGAC GCATTGCAGT CCGAAGGACG TTGCAACAAT
CTTGAGGCCA CTTTCGTCAA GAAAAATGGC GACATCTTTC ACGGCTTGAT GTCAGCGGAA
AAAGTCCGCT TCAAAGACGT TGACTGCATT CTCTCCATCA CGCGCGACAT CACCGAGAAG
AAGCTGGCCG AGGCGCAGAT TCAACAGTTG GCCCATTTTG ATCAACTGAC CGGCCTGCCC
AACCGCAGTC AACTCCATGA TCGCTTCCGG TACGCGCTCA GCCTGGCGCA GCGCCACGGC
GACCAGTTGG CCATCATGTT TCTCGACTTG GACCACTTCA AGAATATCAA CGACACCTTG
GGGCATAGCG TTGGTGATCA ACTGCTGGTG GACGTCTCGC GCCGACTCAA GGCCGCGCTG
CGGGAAGAAG ACAGCTTGTC GCGGCTGGGG GGCGATGAAT TTATTCTGTT GCTACCGGGC
ACTGATGAAG CGCAGGCCAG TCAAGTCGCG ACGAAGTTGC TTGCCGCCGT AGCGCAGCCG
TGCCAGATTG AACAGAATGA ATTGGTGAGC ACGGTGTCGA TTGGTATCGC CCTTTATCCC
AATGACGGAC AGGATTTTGA AACCCTGTCA AAAAACGCCG ACGCCGCCAT GTATCGCGTC
AAGCAAGCCT CGCGCAACGA TTTCCGCTTT TTCACGCAGG AGATGCAGAC CCATTCGGCG
CGCACCCTGC AATTGGTCAA CGCCCTGCGC CATGCCCTGC CCCGGCATGA ATTTGAGCTG
CATTTTCAGC CGCAGGTCGC CTTGCAGGAT GGTCATATTG TGGGCGCCGA AGCCCTGCTG
CGCTGGCGCC ATCCCGAGCT CGGCATGATC TCGCCGGCGG AGTTCATCCC GATTGCCGAA
GACAGTGGGC AGATCCTGGC GATTGGCGAG TGGGTGCTGC GCACCGCCGT CAGGCAATTG
AAGCAGTGGC TGGATGCCGG GCTGCGGCCC ATGGTGATCG CGGTCAACCT GTCAGCGGTG
CAGTTTCGCC ATCCGAACCT GATGGCCCTG GTGACGCGCA TCCTCGACGA GGCCGCGCTG
CCCCCCGAAT TTCTGGAGCT GGAGCTGACG GAGGCCGCCG CGATGGACGA TCCGCCGGCC
GCCATCGCGA TCATGAACAA GCTCGACGAA CACGGCATCC GCATGTCGAT TGACGACTTT
GGCACCGGCT ACTCGAGCCT GAGCTACCTG AAGAAATTCA AGGTCAACAA GCTCAAGATC
GATCAGTCTT TTGTACGCGA CATCAGCGAT GATCCGGATG ACAAGGCGAT CGTCACCGCG
ATCATCAATC TGGCCAGCAG TTTGGGCATG CACACCATTG CCGAGGGGGT GGAAACGGCC
AGTCAACTGG CCTTTTTGCG CTTGCAGGGA TGTGATGAGG TGCAGGGTTA TTACGTCAGC
AAGCCGCTAC CTAAAGATCA ATTCGAAGCG TTCGTGCGTA ATAGCATCAG CTGA
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| Protein sequence | MQPFQQGRFV MPILAKPMRP ALVGIVVFLL AGLVAGGLVY RSEQHRRQLA QSRALAMAAD
HAQSLQQNLQ QALGPAQFEQ VVARGYDYVL WRIDPASQQR QIIAQSAKVP LDAVDFELKV
PNAKWTLSVA PTTGWADPQG LSLKVALAAL FSVLLAYSAK QAGAARVRAN ELQVDVNAQA
VELVALNQRL QSTLDALPDL LFETDMDGRY LAYHSPRSEL LGKTLHRVLP VAVADICLAA
VHEANAVGYS HGKQIQLALP DGAHWFELSA SRKPGLPGDA PTFIVLSRDI TERKKAEIKI
ERLTKLYAAL SQCNQAIVRC SDASELFPII CRDAVNFGGM KMAWIGMLDE ADQLIKPAAS
FGSGVEYLEG IEISVDLSGD KGRGPTGTSI REDRPFWCQD FQHDDATAAW HERGERFGWG
ASASLPLHLK DRVIGAFTLY AGEACAFDEA AQNLLLEMAL DISFALDRFA DERERKIMQD
DLRDSEERYR KAFQTSPDAV NITRLVDGLY VDVNTGFERI TGWRHDEVVG KTATELNLWG
NPADRMRLVD ALQSEGRCNN LEATFVKKNG DIFHGLMSAE KVRFKDVDCI LSITRDITEK
KLAEAQIQQL AHFDQLTGLP NRSQLHDRFR YALSLAQRHG DQLAIMFLDL DHFKNINDTL
GHSVGDQLLV DVSRRLKAAL REEDSLSRLG GDEFILLLPG TDEAQASQVA TKLLAAVAQP
CQIEQNELVS TVSIGIALYP NDGQDFETLS KNADAAMYRV KQASRNDFRF FTQEMQTHSA
RTLQLVNALR HALPRHEFEL HFQPQVALQD GHIVGAEALL RWRHPELGMI SPAEFIPIAE
DSGQILAIGE WVLRTAVRQL KQWLDAGLRP MVIAVNLSAV QFRHPNLMAL VTRILDEAAL
PPEFLELELT EAAAMDDPPA AIAIMNKLDE HGIRMSIDDF GTGYSSLSYL KKFKVNKLKI
DQSFVRDISD DPDDKAIVTA IINLASSLGM HTIAEGVETA SQLAFLRLQG CDEVQGYYVS
KPLPKDQFEA FVRNSIS
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