Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_0450 |
Symbol | |
ID | 3963417 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 455735 |
End bp | 456706 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637915281 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_521733 |
Protein GI | 89899262 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.431349 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAATTGA GAAAACTGGT TATTGGCCTG TCTTTGGCCC TGGGTTTGGC GGCCACCGCC GCAGCCCAGA CCGTCATGAA GATCAACATT GCCATCGCGC AAAATTCGCA CCAGGGCATT GCCATCGACA CCTTCGCCAA GGAAGTTGGG ACCCAAACCA ACGGTCGCTA CAAGATCGAG ACTTTTTACA ACGCTTCACT CGGCAGTGAG CGTGAATCGA TCGAAGCCGT TCAACTGGGC ACGCAGGAGC TGACTTTCAC ATCCACCGGC CCGGTGCCCA ACTTTGTGCC GGAAGCCAAG ATTCTGGACG TTCCCTTTTT GTTTCGTGAC AAGGCGCATG CCCGTGCCGT GCTGGACGGC CCGATCGGCC AGGACATGCT GGCCAAGTTC GACTCCAAGG GCTTCAAGGC TTTGGCCTGG GGCGAGAACG GCATGCGCAA CATGACCAAC AGCAAGCACA CCATCAAGAC CCCGGATGAC CTCAAGGGCC TGAAGATTCG CACCATGGAA AACCCGGTGC ACGTGGCCGC CTACAAAGGC TTGGGCATTG TGACGACGCC GATGGCCATG GCCGAGGTAT TCACTGCGCT GCAGCAGGGC ACGGTAGACG GCCAGGAAAA CCCCTTGTCC GTGATCATGG CAGCCAAATT GGACCAGGTG CAAAAGTACG TGTCACTGAC CGGCCACGTC TATTCACCCG CCATCTTTTT GATGAACAAG GCAGCGTTCG ACAAGCTCAG CCCGGCTGAC CAGAAGGTGT TTCTGGAAGC TGCCAAGGTG GCCGTCAAGG CCAACCGGGC CCGGGTTGAC GCCGACGATG CCATGGGCGT GACTTACCTG CGCGGCAAGG GTATGGAGGT GACAGAGAGC CTGGACAAAT CCAAATTCGT CGCCAAGCTT GCACCGGTGT ACGCTGACTT CGAAAAGCAG TTCGGCAAAG CCAATATGGA CAAGATCCGC AACTACAAGT AA
|
Protein sequence | MKLRKLVIGL SLALGLAATA AAQTVMKINI AIAQNSHQGI AIDTFAKEVG TQTNGRYKIE TFYNASLGSE RESIEAVQLG TQELTFTSTG PVPNFVPEAK ILDVPFLFRD KAHARAVLDG PIGQDMLAKF DSKGFKALAW GENGMRNMTN SKHTIKTPDD LKGLKIRTME NPVHVAAYKG LGIVTTPMAM AEVFTALQQG TVDGQENPLS VIMAAKLDQV QKYVSLTGHV YSPAIFLMNK AAFDKLSPAD QKVFLEAAKV AVKANRARVD ADDAMGVTYL RGKGMEVTES LDKSKFVAKL APVYADFEKQ FGKANMDKIR NYK
|
| |