| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0448 |
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| Symbol | |
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| ID | 3963415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 453878 |
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| End bp | 455155 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637915279 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_521731 |
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| Protein GI | 89899260 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCCG TCATGTTAAG CACCATGGTG CTGTGCTTCG CCCTCACTAT TTCCGTGGCC
GTGTCGATCG GACTGGCCTC GATCCTGGGC ATCCAGGCGT CCAACGCCCA CATGTTGATC
TCCGTCAAGG AGATGTTCAA CGCCATCAAC AAGTTCCCCT TGGCCGCCAT CCCGTTTTTT
ATCCTGGCCG GCAACATCAT GGAAACCGGC GGCATTTCGC GCCGCCTGGT GGACTTTGCC
AAGAGCCTGG TGGGCGGCGT GCAGGGCGGC CTGCCGATGA CCTGCGTGCT GACCTGCATG
ATCTTCGCAT CGGTGTCCGG CTCATCGGTG GCCACCACCT TCGCCATTGG CACCATCCTG
ATTCCGGCGC TCATCAAACA CGGCTACCCC ACCACCTGGG CGGCGGCCTT GCAGGCCACC
AGCGCCGAGC TCGGCGTCAT CATCCCGCCA TCGATTCCGA TGATTCTGTA TGGCGTCAGC
GCTGAAGTCT CCATTGGCGA GCTGTTCATC GCCGGCTTTG GTCCGGGCTT TTTCATCAGT
GGCGCGCTGA TGCTGTTTGT CTGGGGTTAC TGCAAGTACA AGGGCTGGGG CAAGAACGAT
GGCGACGGCC GTCTGTCGGT CGGCAAGGCC ACCTGGAAGG CCGGTTGGGC GCTGCTGATG
CCGGTCATTA TTCTGGGCGG TATTTACGGC GGCATCTTCA CCCCGACCGA GGCGTCGGCG
GTGGCGGTGT TTTACGCGCT GATGGTGGGT CTGGTGATCT ACCGCGAGAT CAAGTTCCCT
GACCTCTACA ACATCCTGCG CAAGTCGGTG CTGTCGTCGG CGGTGATCAT GTTCATCATT
GCCAACGCCG GGCTGTTTGC GTTCCTGATC ACGCGTGCTG GCGTGCCGGA GGCGATTGGC
CTCTGGTTGC AGGATGTCTT GAAAACTCCG GCTTACTTCC TGTTGGGCGT CAACGCTGCG
CTGTTCGTCA TTGGCATGTT CATCGAGACC GGAGCCGCCA TCATTGTGCT GGCCCCGATC
CTGGCACCGG TGGCCATCCA CTTTGGCATC GACCCGGTGC ACTTTGGCCT GGTCATGGTG
GTGAACCTGG CCCTGGGCAT GATCACGCCG CCGTTCGGCG TCAATCTGTT TGCCGCCTGC
ACGGTGGCGC GCATCTCACT GGATCGCATG ATCAAGGACC TGATCCCGTT CGTGCTGGTG
GTGCTGGCCT GCCTGATGGT CATCTCCTAC GTGCCGGCAC TTTCGCTCGG GCTGCGCGAT
CTGGTTTACG CCAGATAG
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| Protein sequence | MTAVMLSTMV LCFALTISVA VSIGLASILG IQASNAHMLI SVKEMFNAIN KFPLAAIPFF
ILAGNIMETG GISRRLVDFA KSLVGGVQGG LPMTCVLTCM IFASVSGSSV ATTFAIGTIL
IPALIKHGYP TTWAAALQAT SAELGVIIPP SIPMILYGVS AEVSIGELFI AGFGPGFFIS
GALMLFVWGY CKYKGWGKND GDGRLSVGKA TWKAGWALLM PVIILGGIYG GIFTPTEASA
VAVFYALMVG LVIYREIKFP DLYNILRKSV LSSAVIMFII ANAGLFAFLI TRAGVPEAIG
LWLQDVLKTP AYFLLGVNAA LFVIGMFIET GAAIIVLAPI LAPVAIHFGI DPVHFGLVMV
VNLALGMITP PFGVNLFAAC TVARISLDRM IKDLIPFVLV VLACLMVISY VPALSLGLRD
LVYAR
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