| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0040 |
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| Symbol | |
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| ID | 3960295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 43735 |
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| End bp | 45708 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637914879 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_521333 |
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| Protein GI | 89898862 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCCTG AAATTGGTCA TTTTTCGCTC ATTCTTGCCC TTTTTGTGGC GCTGGCCCTG
GGTACTTTAA GCGTCGTGGG TGGACAGCAG GGGCGCGCCG ACTGGATGGC AATGGCACGC
CCCGGTGCAC AAGCGCTGTG GTTGCTGACG GCACTCTCCT TTGGCTGTCT GACCTATGCT
TTTTTTACCA ATGACTTTTC CGTCTCTTAC GTCGCGCAGC ATTCCAACAC CAAACTGCCC
GATATCTACC GCATTGCCGG CGTTTGGGGT GGGCACGAGG GCTCGCTGCT GCTGTGGCTG
ATGATGTTGT GCACCTGGAT GATGGCGGTG TCGCTTTTTT CCCGCCAGTT GCCCGAGGTG
ATGGTATCGA GAGTGCTGGG TGTTTTGGCT CTGGTGGCGG TTGGTTTCCT GCTGTTCATG
TTGATCACCT CCAATCCGTT TCTGCGCCTG AGCGACATTC CGGCCGATGG GCGCGATTTG
AATCCGCTGC TGCAAGACCC GGGCCTGGTG TTTCACCCGC CCATGCTGTA CATGGGTTAC
GTCGGTATGT CGGTACCGTT TGCTTTTGCC ATCGCCGCAC TGCTCAACGG CCGGCTTGAC
GCCGCTTGGG CGCGCTGGTC GCGGCCCTGG GCCACTGCGG CCTGGATTTG CCTGACGATC
GGCATTGCGA TGGGTTCCTG GTGGGCGTAT TACGAACTGG GCTGGGGTGG CTGGTGGTTT
TGGGACCCGG TCGAAAACGC ATCCTTCCTG CCCTGGCTGG TCGGCACCGC GCTGATCCAT
TCCTTGGCCG TGACAGAAAA GCGTGGACTT TTTCGCAACT GGACCATCAT CCTGGCCATC
ACGGCGTTCT CCCTCAGCCT GCTGGGAACG TTCCTGGTCC GCTCCGGTGT GTTGACCTCA
GTCCACGCCT TTGCGACCGA CCCCAAGCGC GGCGTGTTCA TCCTGCTCTT CTTGTCCGTT
GTGGTCGGTG GTTCACTCAC CTTGTTTGCC ATGCGCGCCA GCAAAGTCCG CGCTGGCGGC
GCTTTTGCAC TGGTGTCGCG CGAGACTTTT CTGCTGGTTA ACAACGTCTT GCTCACCACC
GCCGCGGCAG CGGTGTTGCT GGGAACCTTG TATCCGCTGA TTGTGGACGC GCTCAACCTG
GGCAAGCTGT CGGTCGGGCC ACCGTACTTC AACTCGGTGT TTGCACCCAT CATGCTGCCG
GTATTGTTTT TTATGGTGCT GGGTTCGTTT GCGCGCTGGA AAAATGACAG CGTGGCGGAA
CTCACGAAAA AGCTGCGCCC GGTGGCCATT CTCTCGGTGC TCCTGGGCTG CAGCGCCCCG
TTTCTTGCCG GCGAGTGGTC GCCTTTGGTG GCGCTCAGTT TGACGCTGGT GTTCTGGATT
GTGCTGGCAT CGATACAACA AATTTACCGT CAGCTCAAGG ACACCGTCAA CTGGAGATCC
ACCCCGATAT CGTTCTGGGG CATGCATGTG GCGCACATTG GCATTGCCGT TTTTGTGGTC
GGTGTCACCA TGGTCAAGGC TTATGAGAAC GAAAAAGACG TGCGCATGGT GGTGGGCGAC
ACGGTGGAAG TGGCTGATTA CACCTTCCGC CTGACGGGTA TTCGTGAGGT GCCGGGTCCC
AATTACACCG CCGACCAGGG TGATGTGGAA GTGCTCCGTG GCGGCAAGCT GCTCAAAACC
CTGCATCCCG AGAAGCGCAC TTATTTCTCA TCCACCATGC CGATGACGGA GACCGCGATT
GACAGCAATT TGCTGCGCGA TGTCTATGTA TCGCTGGGTG AGCGTCTTGA AGGCGGCGAC
AAACCGGCCT GGGCGATGCG GGTCTACCAC AAGCCCTTTA TCGTCTGGAT CTGGCTCGGC
AGCCTGATGA TGGCCTTGGG CGGCGGCATG GCCGCGTTGG ACCGCCGTTA TCGCCGCAAA
GTGACCGCCA GCGCGGGCGC CGTCAATCCA AAAATCAAGG GCGTTGCAGC ATGA
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| Protein sequence | MIPEIGHFSL ILALFVALAL GTLSVVGGQQ GRADWMAMAR PGAQALWLLT ALSFGCLTYA
FFTNDFSVSY VAQHSNTKLP DIYRIAGVWG GHEGSLLLWL MMLCTWMMAV SLFSRQLPEV
MVSRVLGVLA LVAVGFLLFM LITSNPFLRL SDIPADGRDL NPLLQDPGLV FHPPMLYMGY
VGMSVPFAFA IAALLNGRLD AAWARWSRPW ATAAWICLTI GIAMGSWWAY YELGWGGWWF
WDPVENASFL PWLVGTALIH SLAVTEKRGL FRNWTIILAI TAFSLSLLGT FLVRSGVLTS
VHAFATDPKR GVFILLFLSV VVGGSLTLFA MRASKVRAGG AFALVSRETF LLVNNVLLTT
AAAAVLLGTL YPLIVDALNL GKLSVGPPYF NSVFAPIMLP VLFFMVLGSF ARWKNDSVAE
LTKKLRPVAI LSVLLGCSAP FLAGEWSPLV ALSLTLVFWI VLASIQQIYR QLKDTVNWRS
TPISFWGMHV AHIGIAVFVV GVTMVKAYEN EKDVRMVVGD TVEVADYTFR LTGIREVPGP
NYTADQGDVE VLRGGKLLKT LHPEKRTYFS STMPMTETAI DSNLLRDVYV SLGERLEGGD
KPAWAMRVYH KPFIVWIWLG SLMMALGGGM AALDRRYRRK VTASAGAVNP KIKGVAA
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