| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_A3383 |
|---|
| Symbol | |
|---|
| ID | 3610571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007347 |
|---|
| Strand | - |
|---|
| Start bp | 3704642 |
|---|
| End bp | 3706882 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 746 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637692809 |
|---|
| Product | penicillin-binding protein 1C |
|---|
| Protein accession | YP_297585 |
|---|
| Protein GI | 73543065 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
|---|
| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.743243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGGC CGGCAGCACA TCGTGCGGCA GTTGTCATGT TTGCGATTGC GCTGACATGC
ACAACACTCC CCGCCCATGC ACTTCCAAGC TTCACCCAAG TCCGCGCAGA CTGGCGAAGC
TCCGACCTCG TCATCACCGA TCGCAACGGC GAAACCGTGG CGCGCATACG TGACGATTTC
CGCGTGCGCC GCGGTGATTG GGTCACCCTG CAGGAAACCT CGCCGGCGTT GCGCACGGCC
ATCGTGCTGT CGGAGGACAA GCGCTTCTAC GCACACAGCG GCGTCGACTG GCAAGGCGTG
GCTGCAGCGG CCTGGGCCAA TCTCTTTAAC ACGCGGACGC GCGGTGCTTC CACGCTGACG
ATGCAACTGG CAGGCCTGCT CGATGAGGAC CTGCGCAGGC CGGGCGCCGC GGGGCAGGGC
CGCAGCGTCA CGCAGAAGCT CGGACAGGCT GCCGGCGCCG CGTCGCTGGA ACGAAGCTGG
AGCAAGGACC AGATCCTTGA AGCCTATCTG AACCTCGTGC CGTTCCGTGG CGAACTTGTC
GGGCTGTCGG CGATGTCGCA AGTGTTGTTC GGCAAGTTTC CGGAGGGACT GGACGCGCGT
GAATCGGCGC TGGCCGTGGC GCTCGTGCGT GCGCCCAACG CAAAGGCAGC GCAGGTGTCG
CGCCGCGCAT GCGGCATCCT GCGCGAGATG CGCTTGCCGC GCGAGTGCGA GGGGCTGGAA
GGCTTTGCAC AACTGGCATT GCTGCGCTCA GGCACCGTCG CGCAGCGCGG CACGGCAGCG
TCGCCGCAGC CGAGGCAACT CGCACCGCAT CTTGGTCGTA TGCTGGCGAG TCAGGCGCGT
GCGCAACCAC GGACAGATCT GGCGCAGTCG TACCTTCGAT CGACGCTTGA CGCAGATCTC
CAGCGCGTGG CCACGGCGAG CCTGCAGCGG CATCTGCGCG AACTGGCCGG ACGCCATGTG
GAAGACGGCG CCGTGGTGGT GATCGACAAC GCGAGCGGCG ACGTGCTGGC CTACGTGGGC
TCGTCCGGCG AGTTGTCCGG TGCGTCGGAA GTCGATCATG CACAGGCGCT GCGGCAGGCG
GGTTCAACGC TGAAACCATT CCTGTACGAG CAGGCGCTGG AAGAACGGCG GCTGACGGCT
GCTTCGCTGC TCGACGACCG GCCTGTCAAC CTGCCGGTCG GCGGCGGGCT GTACGTGCCG
CAGAACTACG ACCATCGCTA CGCGGGCTGG GTCAGTACGC GCGCGGCGCT TGCTGCTTCG
CTGAACGTGC CCGCGGTGCG CACGCTCGTG ATGGTGACAC CGCACCGCTT TCACAAACGC
TTGGTGTCGC TGGGACTGCC GTTGACAGAA GCCGGCGACT ACTACGGATA TAGCCTTGCG
CTCGGCAGCG CCGATGTGTC GCTGCTGGCG CTGACCAACG CGTATCGCGC GCTTGCCAAC
AGCGGTCGCT ATGCACCGGT GCGCATGCGT GCGGGCATGG CGGCAGTGCC GACTACGGCG
GTGATGGCGC CAGCAGCGAG CTACGTGATC GGCGACATCC TGTCCGACCG CCACGCACGG
GCGCGCACGT TCGGGCTCGA CAGTCCGCTG ACCACGCGTT TCTGGACTGC GGTGAAGACC
GGTACGAGCA AGGACATGCG CGACAACTGG TGCATCGGCT GGTCACGGCG TTATACCGTT
GGCGTGTGGG TTGGCAATGC GAGCGGGGCC AGCATGCATG ACGTATCGGG GGTATCCGGC
GCGGCGCCGG TCTGGCATGA CGTGATGGAG GCGCTGCACC GTTCGCAGCC GAGCATGGCG
CCTGCGGCGC CGGCGGGCGT GGAGCGCGTC GCGCTGGCGT TTGACGATGA CCTCGAGCCA
GCGCGTGAAG AAGTGTTTCT CGTTGGTACG GCCCAGACAC GTGTCGGCGT GGGGATGTCG
TCAGCGCGAT CTGGCGTGCC GGCCATTGCC AATCCGGCCA ACGGCACGGT GTTTGCGCTG
GACCCTGACA TGCCGCCGTC GGCGCAACGT GTGTGGTTCC ACGCCGAAGG CGTAACGGGC
CAGACCGCGC GTTCTGTGAC GTGGCGCATG GATGGCAAGC CGCTTGGGCG TGGCGGTGAA
GTGGCGTGGC TGCCGTGGCC CGGCCGGCAT CAGGTTGAGT TGCTCGACGC CGCGGGCAAG
GTGGTGGACC GTATCGGCAT TGAAGTGCGC GGGGCAAGCG TGCGTGCTCC CGCCGCGCAA
ACGGGGCGCG GCGCTCGCTG A
|
|---|
| Protein sequence | MKRPAAHRAA VVMFAIALTC TTLPAHALPS FTQVRADWRS SDLVITDRNG ETVARIRDDF
RVRRGDWVTL QETSPALRTA IVLSEDKRFY AHSGVDWQGV AAAAWANLFN TRTRGASTLT
MQLAGLLDED LRRPGAAGQG RSVTQKLGQA AGAASLERSW SKDQILEAYL NLVPFRGELV
GLSAMSQVLF GKFPEGLDAR ESALAVALVR APNAKAAQVS RRACGILREM RLPRECEGLE
GFAQLALLRS GTVAQRGTAA SPQPRQLAPH LGRMLASQAR AQPRTDLAQS YLRSTLDADL
QRVATASLQR HLRELAGRHV EDGAVVVIDN ASGDVLAYVG SSGELSGASE VDHAQALRQA
GSTLKPFLYE QALEERRLTA ASLLDDRPVN LPVGGGLYVP QNYDHRYAGW VSTRAALAAS
LNVPAVRTLV MVTPHRFHKR LVSLGLPLTE AGDYYGYSLA LGSADVSLLA LTNAYRALAN
SGRYAPVRMR AGMAAVPTTA VMAPAASYVI GDILSDRHAR ARTFGLDSPL TTRFWTAVKT
GTSKDMRDNW CIGWSRRYTV GVWVGNASGA SMHDVSGVSG AAPVWHDVME ALHRSQPSMA
PAAPAGVERV ALAFDDDLEP AREEVFLVGT AQTRVGVGMS SARSGVPAIA NPANGTVFAL
DPDMPPSAQR VWFHAEGVTG QTARSVTWRM DGKPLGRGGE VAWLPWPGRH QVELLDAAGK
VVDRIGIEVR GASVRAPAAQ TGRGAR
|
|---|
| |