Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Reut_A3189 |
Symbol | rpoB |
ID | 3612102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia eutropha JMP134 |
Kingdom | Bacteria |
Replicon accession | NC_007347 |
Strand | - |
Start bp | 3493452 |
End bp | 3497558 |
Gene Length | 4107 bp |
Protein Length | 1368 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637692606 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_297393 |
Protein GI | 73542873 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.544144 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGTACA GCTTCACCGA AAAGAAGCGC ATTCGCAAAT CCTTTGCGAA GCGCGCGACG GTTCATCAGG TTCCATTCCT GCTTGCAACC CAGATTGAAT CCTACACCCA GTTCTTGCAA GCGGAAACGC CGGCCGCGCG TCGCAAGACC GAAGGCCTGC AGGCCGCTTT CAACGCGATT TTCCCGATTG CCTCCCATAA CGGGCTTGCC CGTATGGAGT TTGTCTCGTA TCACCTTTCC AACCCGCCGT TTGACGTCAA GGAATGCCAG CAGCGTGGCC TGACGTTCCA CTCGGCCCTG CGCGCGAAGG TCCGCCTGAT CATCAACGAT CGCGAGAACC CGGGCAAGGT CAAGGAAGTG AAGGAGCAGG AAGTGTACAT GGGCGAGATT CCGCTCATGA CCTCGACCGG CTCGTTCGTG ATCAACGGCA CCGAGCGTGT CATCGTCTCG CAGCTGCACC GCTCGCCGGG CGTGTTCTTC GAGCACGACA AGGGCAAGAC CCACAGCTCG GGCAAGCTGC TCTTCTCCGC ACGTATCATC CCTTACCGTG GTTCGTGGCT GGACTTCGAA TTCGATCCGA AGGACATCCT GTACTTCCGC GTCGACCGCC GCCGCAAGAT GCCGGTGACG ATCCTGCTGA AGTCGATCGG CCTGACGCCG GAGCAGATCC TCGCGCACTT CTTCGTGTTC GACAACTTCA CGCTGCAGTC GGAAGGCGCG CAGCTCGAGT TCGTGCCCGA GCGCCTGCGC GGTGAAGTCG CGCGCTTCGA CATCGCGGAC AAGAACGGCC GCGTGGTCGT CGAGAAGGAC AAGCGGATCA ACGCCAAGCA CATCCGTGAC CTGGACTCGG CTGGCACCAA GCTGATCAGC GTGCCGGAAG ACTATCTGCT GGGCCGCGTG CTGGCCAAGA ACATCATCGA CCCGGACACC GGTGAGGTGA TCGCCAACGC CAACGACGAG CTGACCGAAA CTGTTCTCGA GAACCTGCGC GAAGCCGGCG TCAAGCAGAT CCAGACCCTG TACACCAACG ATCTGGACCA GGGCCCGTAC ATGTCGCAGA CGCTGCGCGT GGACGAGACC GCCGACCAGA CCGCTGCGCG TATCGCGATC TACCGCATGA TGCGCCCCGG CGAGCCGCCG ACCGAAGAAG CCGTGGAAGC GCTGTTCCAG CGCCTGTTCT ACAGCGAAGA GTCGTACGAC CTGTCGCGCG TGGGCCGCAT GAAGGTCAAC AGCCGTCTGT CGCGCCCGAG CGGCGAGGGC AGCATGGTGC TGCAGGACGA GGACATCCTC GAGACCATCA AGATCCTGGT CAACCTGCGT AACGGCAAGG GCGAAGTCGA CGATATCGAC CACCTGGGCA ACCGCCGCGT GCGTTGCGTC GGCGAACTGG CCGAGAACCA GTTCCGTGCC GGCCTGTCGC GCGTGGAGCG CGCCGTCAAG GAACGTCTGG GCCAGGCCGA GACCGAGAAC CTGATGCCGC ACGACCTGAT CAACTCGAAG CCGATTTCGT CGGCGATTCG CGAGTTCTTC GGTTCGTCGC AGCTGTCGCA GTTCATGGAC CAGACCAACC CGCTGTCGGA AATCACCCAC AAGCGCCGTG TTTCGGCCCT TGGCCCGGGC GGTCTGACGC GCGAGCGTGC CGGCTTTGAA GTCCGTGACG TGCACCCGAC CCACTATGGC CGCGTGTGCC CGATCGAAAC GCCGGAAGGT CCGAACATTG GTCTGATCAA CTCGCTGGCA CTGTATGCGC GCCTGAACGA GTACGGCTTC CTGGAAACGC CGTACCGCAA GGTCGAGAAC AGCAAGCTGA CCGACCAGGT CGACTACTTG TCCGCGATCG AGGAAGGCAA GTACGTGGTG GCGCAGGCCA ACGCGACCGT CGACGCCGAG GGCAACCTGA CCGACGAACT GGTGTCGGCA CGTGAAGGTT CCGAGCGTGA AACCCGTATG GTCACGCCGG ACCGCGTGCA GTACATCGAC GTGGCGCCGT CGCAGATCGT GTCGGCCGCA GCATCGCTGG TGCCGTTCCT GGAACACGAT GACGCGAACC GTGCACTGAT GGGCGCGAAC ATGCAGCGTC AGGCCGTGCC TTGCCTGCGT CCGGACAAGC CGCTGGTCGG TACCGGCATC GAGCGCACCG TTGCGGTCGA CTCGGGTACT GCCGTGCAGG CGATGCGTGG CGGCGTGGTC GACTACGTCG ACGCGATGCG TATCGTGATC CGGGTGAACG ACGACGAAGC CGTGGCCGGT GAAGTCGGCG TGGACATCTA CAACCTGATC AAGTACACGC GTTCGAACCA GAATACGAAC ATCAACCAGC GTCCGATGGT CAAGGTCGGC GACATCGTGG CACGCGGCGA CGTCGTGGCC GATGGCGCCT CGACCGACCT GGGCGAGCTC GCGCTCGGCC AGAACATGCT GGTCGCGTTC ATGCCCTGGA ACGGCTACAA CTTCGAGGAT TCGATCCTGA TCTCGGAGCG TGTGGTGGCC GAAGACCGCT ATACCTCGAT TCACATCGAG GAACTGTCGG TCGTTGCCCG CGACACCAAG CTCGGACCTG AAGAAATTAC GCGCGATATC TCGAACCTGG CCGAAGCCCA ATTGGCTCGC CTGGACGAGT CGGGCATCAC CTACATCGGC GCCGAAGTCG AAGCCGGCGA CGTGCTGGTG GGCAAGGTCA CGCCGAAGGG CGAGACCCAG CTGACCCCGG AAGAGAAGCT GCTGCGCGCA ATTTTCGGCG AGAAGGCTTC GGACGTGAAG GACACCTCGC TGCGCGTGCC GTCGGGCATG AGCGGCATCG TGATCGACGT CCAGGTCTTC ACCCGCGAAG GCGTGACCCG CGACAAGCGT GCCCAGTCGA TCATCGACGA CGAACTGAAG CGCTATCGCC TGGACCTGAA CGACCAGCTG CGTATCGTGG AAGGCGACGC GTTCCAGCGT CTGGAGCGTC TGCTGATCGA CAAGACCGTC AACGGCGGTC CGAAGAAGCT GGCAAAGGGC GCGAAGCTGA CCAAGGAATA CCTGGCGGAA ATCGACAAGT ACCACTGGTT CGACATCCGT CCGGCCGACG AGGAAGTGGC TGCCCAGCTG GAAGCCGTCA AGGAAGCCAT CGAGCAGAAG CGCCACGAGT TCGACCTGGC CTTCGAAGAG AAGCGCAAGA AGCTCACGCA AGGCGACGAA CTGCCGCCGG GCGTGATCAA GATGGTCAAG GTGTACCTGG CCGTCAAGCG CCGCCTGCAG CCTGGCGACA AGATGGCCGG CCGTCACGGT AACAAGGGTG TGGTGTCGAA GATCGTTCCG ATCGAAGACA TGCCGTACAT GGCGGACGGT ACCCCGGCCG ACATCGTGCT CAACCCGCTG GGCGTGCCGT CGCGGATGAA CGTGGGCCAG ATTCTGGAAA CCCACTTGGG CTGGGCCGCG CGCGGTCTGG GCCAGCGCAT CGGCGACATG CTCAAGGCCT CGGCCAAGGC GCAGGAACTG CGTCCGCTGC TCGCGCAGAT CTACAACGAG AGCGGCAAGG CCGAAGACCT GGACAGCCTG TCCGACGCCG AAGTGCTGGA ACTGGCAACG AACCTGAAGA AGGGCGTGCC GTTCGCAACG CCGGTGTTTG ACGGTGCGCA TGAAGACGAA ATCCGCCGCA TGCTGGACCT GGCCTACCCG GACGACATCG CCAAGGAAAA GGGTCTGACG GCTTCCAAGC AACAGGTCAC GCTGCACGAC GGCCGCACCG GCGAGGCGTT CGAGCGTCCG GTCACGCTGG GTGTGATGCA CATGCTGAAG CTGCACCACT TGGTCGACGA CAAGATGCAC GCGCGTTCGA CCGGTCCGTA CTCGCTGGTG ACGCAGCAGC CGCTGGGCGG TAAGGCCCAG TTCGGTGGCC AGCGTTTCGG TGAGATGGAA GTGTGGGCAC TGGAAGCCTA CGGCGCGTCG TACGTGCTGC AGGAAATGCT GACGGTCAAG TCCGATGACG TGAACGGCCG TACCAAGGTG TACGAGAACA TCGTCAAGGG CGAGCACTCG ATCGATGCCG GCATGCCGGA ATCGTTCAAC GTGCTGGTGA AGGAAATCCG CTCGCTGGGT ATCGACATCG ACCTCGATCG CTACTGA
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Protein sequence | MAYSFTEKKR IRKSFAKRAT VHQVPFLLAT QIESYTQFLQ AETPAARRKT EGLQAAFNAI FPIASHNGLA RMEFVSYHLS NPPFDVKECQ QRGLTFHSAL RAKVRLIIND RENPGKVKEV KEQEVYMGEI PLMTSTGSFV INGTERVIVS QLHRSPGVFF EHDKGKTHSS GKLLFSARII PYRGSWLDFE FDPKDILYFR VDRRRKMPVT ILLKSIGLTP EQILAHFFVF DNFTLQSEGA QLEFVPERLR GEVARFDIAD KNGRVVVEKD KRINAKHIRD LDSAGTKLIS VPEDYLLGRV LAKNIIDPDT GEVIANANDE LTETVLENLR EAGVKQIQTL YTNDLDQGPY MSQTLRVDET ADQTAARIAI YRMMRPGEPP TEEAVEALFQ RLFYSEESYD LSRVGRMKVN SRLSRPSGEG SMVLQDEDIL ETIKILVNLR NGKGEVDDID HLGNRRVRCV GELAENQFRA GLSRVERAVK ERLGQAETEN LMPHDLINSK PISSAIREFF GSSQLSQFMD QTNPLSEITH KRRVSALGPG GLTRERAGFE VRDVHPTHYG RVCPIETPEG PNIGLINSLA LYARLNEYGF LETPYRKVEN SKLTDQVDYL SAIEEGKYVV AQANATVDAE GNLTDELVSA REGSERETRM VTPDRVQYID VAPSQIVSAA ASLVPFLEHD DANRALMGAN MQRQAVPCLR PDKPLVGTGI ERTVAVDSGT AVQAMRGGVV DYVDAMRIVI RVNDDEAVAG EVGVDIYNLI KYTRSNQNTN INQRPMVKVG DIVARGDVVA DGASTDLGEL ALGQNMLVAF MPWNGYNFED SILISERVVA EDRYTSIHIE ELSVVARDTK LGPEEITRDI SNLAEAQLAR LDESGITYIG AEVEAGDVLV GKVTPKGETQ LTPEEKLLRA IFGEKASDVK DTSLRVPSGM SGIVIDVQVF TREGVTRDKR AQSIIDDELK RYRLDLNDQL RIVEGDAFQR LERLLIDKTV NGGPKKLAKG AKLTKEYLAE IDKYHWFDIR PADEEVAAQL EAVKEAIEQK RHEFDLAFEE KRKKLTQGDE LPPGVIKMVK VYLAVKRRLQ PGDKMAGRHG NKGVVSKIVP IEDMPYMADG TPADIVLNPL GVPSRMNVGQ ILETHLGWAA RGLGQRIGDM LKASAKAQEL RPLLAQIYNE SGKAEDLDSL SDAEVLELAT NLKKGVPFAT PVFDGAHEDE IRRMLDLAYP DDIAKEKGLT ASKQQVTLHD GRTGEAFERP VTLGVMHMLK LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAS YVLQEMLTVK SDDVNGRTKV YENIVKGEHS IDAGMPESFN VLVKEIRSLG IDIDLDRY
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