| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4421 |
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| Symbol | |
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| ID | 5541934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5682248 |
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| End bp | 5683552 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640896519 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001434455 |
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| Protein GI | 156744326 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0230065 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.999715 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCACA TTATCGAACG CTGGCGCGCA CTGAAAACCG ACGCGCGTCG CTATCTTCTG
CACCTGGCGA TCCTTACGCT CAGCCTTTCG GTGGTGGGGC TGTACTACAA TCTGGCGGTG
CTGGCGCTCG GTTATTCCCG TGGCTTCCTT GGCATCCTGC AAACAGTCAC ACAGGCGGTT
GCGGCGCTGT TGAGCTTGCC GCTCTGGTTG GGCGTGCAGC GCCTGGGATT GCGCGCTGCG
ATCATAACGT CGGTGGCGTT GTATGCCGCC GGCATTCTGT TGTTCGCCGC TTTTCCGCAG
GCGGCGCTGC TCATCTGTTC TGCCGCTCTG ATGGGAATGG CGTCCGTGCT GATGCAGGTG
ACTGCTGCAC CTCTCATGAT GCGCCTCAGC AACGACGCCA CTCGCGATGA TCTGTTCAGC
GCCAGCGCCG CAGTCGCCGT TGGGTTGAGC GGCATCGGCA ACCTGGGCGC AGGGTTCATC
GCCGATACGC TGAGTCACGT GCTTGGCGCT CCCGCCGACA GTGGCGCGAC CTATCGCGCC
GTTTTTGCGA TCGCCGGGAT TGGGGTACTG GCATCGCTTC CACCGTTGTT CCTGATTCGT
GAACCGGAAC GAGCGCCAGA GTCACCCTTG CCTGAAAGCG GCGCCTCACC TTCGGGTACA
GGATCGTTCT TCGGTGGTCT TCCCTCCTGG CTGTTGGTTG CCCAACCATG GTTCTGGCGT
CTTCCGACGC CACTACGCGC TTTGTTGCGC AAGCCAGCGT TTGTGGCGAA ACTGCTGCTG
CCGCCGTTCC TGATCTCGTG GGGCGCGGCG TTGCTCATCC CTTACCTCAA CCTCTACTTC
CGCGAACGGT TTGGCCTCGA CAATCGCGCG CTCGGCGTAC TCTTCGCCGG ATTCGATGTG
GCGACCGGTC TGGCGTCATT GACCGGTCCG GCGCTGGCGG CGCGGCTGGG GAAGATGCGC
ACCGTGGCGG TGACCCGCGC TATCGGCGTG CCGTTGCTGC TGATCCTGGG AGCGGCGTCG
GATCTGTGGC TCGCAATTGC GGCGGCGCTG GCGCGGGTGA TGGCATCCAA TATGGCATCG
CCGCTCTACG ACGCCTATGC GATGGAACAG ACTGAGGAAA GTGCGCGTCC GTTCATGATC
GGTCTGCTGG GAGCAGCGTA CAGCATCGGG TTTCTCATTG CTCCCTTGAT CAGCACTTTT
GTTCAGGAAC GGTATGGCTT TGGTCCGCTG TTCGTCGCAA CAGCGATCCT GTATGCACTC
TCGGTTGCTG TCACATGGTG GTTTTTTGGG AAAGAGCGCC CTTAA
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| Protein sequence | MHHIIERWRA LKTDARRYLL HLAILTLSLS VVGLYYNLAV LALGYSRGFL GILQTVTQAV
AALLSLPLWL GVQRLGLRAA IITSVALYAA GILLFAAFPQ AALLICSAAL MGMASVLMQV
TAAPLMMRLS NDATRDDLFS ASAAVAVGLS GIGNLGAGFI ADTLSHVLGA PADSGATYRA
VFAIAGIGVL ASLPPLFLIR EPERAPESPL PESGASPSGT GSFFGGLPSW LLVAQPWFWR
LPTPLRALLR KPAFVAKLLL PPFLISWGAA LLIPYLNLYF RERFGLDNRA LGVLFAGFDV
ATGLASLTGP ALAARLGKMR TVAVTRAIGV PLLLILGAAS DLWLAIAAAL ARVMASNMAS
PLYDAYAMEQ TEESARPFMI GLLGAAYSIG FLIAPLISTF VQERYGFGPL FVATAILYAL
SVAVTWWFFG KERP
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