Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4412 |
Symbol | |
ID | 5541925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5665141 |
End bp | 5667504 |
Gene Length | 2364 bp |
Protein Length | 787 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640896510 |
Product | hypothetical protein |
Protein accession | YP_001434446 |
Protein GI | 156744317 |
COG category | [S] Function unknown |
COG ID | [COG1432] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00288] conserved hypothetical protein TIGR00288 |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00112817 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0579767 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTACCG ACAATCCGCG TCTCGACGTC GCTGTGTTCA TCGACTTCGA GAACGTCTAC GTCAGTGTCC GCGACAAACT CGACGTCAAT CCAAACTTTG AAATCATCAT GGATCGCGTT GCGGACCTGG GACGGGTGGT GATCGCCCGC GCATACGCCG ACTGGTATCG CTATCCGAGA GTAACGAGCG CCCTGTACGC CAATGGCATC GAGCCGATGT ATGTCCCGAC CTATTACTAT GATCGCGATC TGGGTCGGAC GGGGCGCGCC ATCAAGAACA GCGTCGATAT GAATCTCTGT ATCGACGCGA TGAAAACACT GTACACCAAC CCGAACATCG GCAAATTCGT GCTCGCCACC GGCGACCGCG ATTTTATTCC GCTGGTGAAT GCGATCCGCC AGCATGGCAA GGAAGTCATT ATTATCGGAG TGGGGGGCGC CGCTTCGGGG CACCTTGCCC AAAGCGCCGA TGAGTTCATC TTCTACGAGC AATTGCTGGG CAAGAAGCCG CAGCCGCTGC AAGCCGATGC GCCGCGTATC CGCATGCCAG AGCGCGGGCG CGATGTTGAG GAGGTAGTGG AACCTGCGCC ATCCGTGCGG ATGCGCCAGG AAGCGCAATC GGCGGAGCAC ACGCCGCCGC CTGAACCACC CGCTCCCGAA ACCGCGCGTG AAGAAACCGA CATTTACGAC ATGCTCGTGC GGGCAGTGCA TCTGGCGCGC GAACGAGGGT ATGTCTGCTC TTTCGGCTCG CTCAAACTCG TGATGAAAGA GTTGATGGGT GGGGAGTTCA AGGAGAGTAA GTATCGCGAC TCGACCGGCA AGCCGTTCGC AAAGTTCAAA GATTTTGCCC TCGAAGCCGA GCGCCGCGGC AAGGTGCAGG TTTTTACGAG CGGCGCCGTC GTCGAAGTCT TTCTGCCCGG CGAGGACCCG TACAAACTTT CGCAGTTCGC CCAGGACCTC AAAGAAGAAC CGCCGGTCAG CACGTCCACC ACGCCGGTGC ACGTCGATGC CCATATCGAT GGTCGCCCGG TCTCGAGCAG CCGCCGCCGT CGCCGCCGTC GCAGCAGCAC AACTCGCACA ACAATCTCGC CCGATACGAT CACTGCCCCA TCGCAGGATG AGTTCGTCGT GCATGAGGAC GTGACCGACG AATTGATGAC GGAGGCGCTG CACGACGTGA TGAACGGCGA ATCCGCCGCG ACGGACGTGG TCTTCGAGGA ATTGCTCGAC CGCCTGGAAG CCGAGCGTGA GCGACAGGAA GCGCTTGCAT CGTTCGATGT GCCGATTGAC GAGCCAATGC TTGATGAGTT GCCCGATCTG GAGGAGGAGC CGGATGTGAC GATATCGGGC GACAGTCTGG TGGAAGAACC GATTCTGGCA GCGCCTGAAC CGGACGATCA GATGATGATT ATGGATAGGC CGGTTGAGCT GTCGGAGCCA TTTGCGACGC CTGAAACACC GGTTGGTGAA CCAACAGCGC ACCTGCCGGA GACGCCTCCC TTCACCGACG CCGAGTGGCA GATGTTGCGC GAGGTGGTCG TTTCGGCGGG ACGTCCTTTG TCGTTCGCAC AGATCCACGA TCTGATGCGG GGCGCCCGCA ACAACGCCGG CATCGTTCGC ACGAACGAAG AACTGCGGTC GCTGATCAAG CAGGCGATTA ACACCGGTGT CCTTCGCCGC AGCGGCAAAG GCGCCCGCGT CGTGTATCAC CTGGCGCCCT ACGAAACATC CGCAGCGACA GAAGGCGTCG ATGCCTCTGC GGTCAAGGCA TCGGAAGAGG CGGCGTCTGA GCCGTCGATT ATCAGGGACG CTGTCGAGAC GATGGTTGTG TCCGAGGCAT CTGCGCCTGC GCCTGCATTG GAGTCGCCTG AAATCGTTGC TGCCGAACCA CTCGCTGCCG CTGACGTATT ACCAGCGGAT GTGACCGACG AGATGCCGCA GGGAAAGGTT CCTGAAGAAA CAGAGACCGC TGCCGAACCA GAAGTGTTGG CGCCTGCGCC GGACGCAGTG GAAGAAGGCG TCGTCGCTCA TGGTGTGGAG TCGCCGCCGG TCGTAGCGGA AGGATCGGTG ATGGCGGAGG AGACGCCACG TGAGACGTCG GTCACCGTCG GCGTCCCGGC AGAGGCGCCG GTGACAGCAG TTGACGATCA CGCAACCGCA GAGTCAAAGG TTGTCGACCA ACCGACGCCA CGCCGTCGTC GCACTACTGT GCGCACGAAC GCAGAAGCCG ATCAAACGAC GGCGGAAGCG CGTCCAACAC GTTCACGCAG CAAAGCTGCC GTTACCGCGC CGACCGAAGA AGCGCCGCGT CCGACACGGC GGCGCAAGAA AGTCGAGACG ACTGAAGAAC CGACTGAGGT GTGA
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Protein sequence | MATDNPRLDV AVFIDFENVY VSVRDKLDVN PNFEIIMDRV ADLGRVVIAR AYADWYRYPR VTSALYANGI EPMYVPTYYY DRDLGRTGRA IKNSVDMNLC IDAMKTLYTN PNIGKFVLAT GDRDFIPLVN AIRQHGKEVI IIGVGGAASG HLAQSADEFI FYEQLLGKKP QPLQADAPRI RMPERGRDVE EVVEPAPSVR MRQEAQSAEH TPPPEPPAPE TAREETDIYD MLVRAVHLAR ERGYVCSFGS LKLVMKELMG GEFKESKYRD STGKPFAKFK DFALEAERRG KVQVFTSGAV VEVFLPGEDP YKLSQFAQDL KEEPPVSTST TPVHVDAHID GRPVSSSRRR RRRRSSTTRT TISPDTITAP SQDEFVVHED VTDELMTEAL HDVMNGESAA TDVVFEELLD RLEAERERQE ALASFDVPID EPMLDELPDL EEEPDVTISG DSLVEEPILA APEPDDQMMI MDRPVELSEP FATPETPVGE PTAHLPETPP FTDAEWQMLR EVVVSAGRPL SFAQIHDLMR GARNNAGIVR TNEELRSLIK QAINTGVLRR SGKGARVVYH LAPYETSAAT EGVDASAVKA SEEAASEPSI IRDAVETMVV SEASAPAPAL ESPEIVAAEP LAAADVLPAD VTDEMPQGKV PEETETAAEP EVLAPAPDAV EEGVVAHGVE SPPVVAEGSV MAEETPRETS VTVGVPAEAP VTAVDDHATA ESKVVDQPTP RRRRTTVRTN AEADQTTAEA RPTRSRSKAA VTAPTEEAPR PTRRRKKVET TEEPTEV
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