Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4372 |
Symbol | |
ID | 5541885 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5625565 |
End bp | 5626653 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640896478 |
Product | periplasmic binding protein |
Protein accession | YP_001434414 |
Protein GI | 156744285 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4558] ABC-type hemin transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.670262 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTCCA GCCATCATGA GCGCCACGCG GCGTCGGTCG GTCGGTTGCG TCGGATGCTT CTTGGGTTCA GCCTGGCTGT CGTGGCGTTG CTCGCTGCAT GCGGGACGCC GTCGCCTTCC GGTGTGATTC CTCCCGCAGC CACGAGAGTT CCCGCCTCTT CATCGCTCCC AACACCTGCA TCCACGAGTG TGCCGGGGAT CGTCGAGTCT GTTCCAGGCG AGGCAGAACC GCAACTTCCG GCCACCGTCG TCGATTATCA GGGCGAGCAG GTGACGATTA CGTCCATCGA ACGGATCGTC AGTCTGAACG GCGATGTGAC CGAAATCATT TTTGCGCTTG GGATGGGGGA TCATGTCGTC GGCGTCGATA GCAGTGCCAC ATTTCCTCCC GAACGCACCA AAATGCTGCC AAACATCGGC TATCAACGGC GATTGAGCGC CGAAGGAATC CTGGCGCTCA ATCCGACGCT GGTGATCGGC GATGAGGCGG CCGGTCCGCC CGAAACGCTG GCGCAGATCC GCACCGCAGG CGTGCCGGTG GCGATCACTG CCGATCCGCC AACGCTCGAT GCACCGGTGC AGAAAATTCG GTTTGTCGCG CAGGCGCTCG GCATTCCGCA GCGCGGCGAA CGCCTTGCCG CGCAGGTCGA AGCCGAGATC GCGCGCGCGC GCGACCTGGC GAGTCGAATA ACGAACCCGC CGCATGTCCT CTTTCTCTAT CTGCGCGGCA CGGATGTTCA GCAGGTCGCC GGCAGTAAAA CGCCGGTCAA TGTGATGATC ACTGCCGCCG GCGGACTCAA TGCAGGTGCG GAAGCCGGGA TTGTGGAGTT CAAACCGTTG AGTCCCGAAG TGGTCATTGC TGCGCAACCC GATGTGATTC TAGTGCTGGA AAAAGGGCTG GAGTCAGTTG GCGGCGTCGA TGGTCTGCTG ACCATCCCCG GTCTCGCTGA CACGCCGGCC GGGAAACAGC GTCGGATCAT TGCATTCGAT GATCTCTACC TGCTCGGCAT GGGTCCGCGC ACCGGCCAGG CGCTCGCCGA TCTCGCCATC GCATTGTATG AGACTTCATC ACAGGAGAAG CATCCATGA
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Protein sequence | MTSSHHERHA ASVGRLRRML LGFSLAVVAL LAACGTPSPS GVIPPAATRV PASSSLPTPA STSVPGIVES VPGEAEPQLP ATVVDYQGEQ VTITSIERIV SLNGDVTEII FALGMGDHVV GVDSSATFPP ERTKMLPNIG YQRRLSAEGI LALNPTLVIG DEAAGPPETL AQIRTAGVPV AITADPPTLD APVQKIRFVA QALGIPQRGE RLAAQVEAEI ARARDLASRI TNPPHVLFLY LRGTDVQQVA GSKTPVNVMI TAAGGLNAGA EAGIVEFKPL SPEVVIAAQP DVILVLEKGL ESVGGVDGLL TIPGLADTPA GKQRRIIAFD DLYLLGMGPR TGQALADLAI ALYETSSQEK HP
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