| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4214 |
|---|
| Symbol | |
|---|
| ID | 5541725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5449502 |
|---|
| End bp | 5450632 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640896321 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001434259 |
|---|
| Protein GI | 156744130 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.278975 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATGGC TCGATTTGTT TCTTATTTTT TGCCTGAGCG CCGTCCTGAT CCCGCAGACC
GGCGTCGCTG TCGGTCGCGA GCGATGCTTC CGCGAAACCG GCTACTGCAT CTCTGGACCA
ATTCTGATCT ACTGGGAACG AAACGGCGGT CTCAGAGTCT TTGGCTTTCC AATCAGTAAT
CAGTCGATCC AGACGGCTGA AGATCGGATG CTGACCGTGC AGTGGTTCGA GCGCGACCGT
CTGGAAATCC AGGCGGACGG GCACGTGACC GCTGGACGTC TTGGAGCGCG GTATCTGGAG
TTGCAGGGCC GCCCCTGGCA GACGTTTCCG ACCGTGGCGC AGGCAGATCC GGGATGCGCC
TACTTTGCCG TTACCGGTCA TCAGGTGTGC GAACCATTTC TGATCTACTG GCGTGTGCGC
GGCGGTCTGG AGCGGTTCGG CTACCCGATT ACTGAGCGCA TGAACGAAGA AATCGAGGGG
AAGGTCTATC AGGTGCAATA CTTCGAGCGC CGGCGGATGG AGTACCATCC AGAACTTGCC
GGCACGCCTT ATGAAGTGCT TCTGGGGCGA TTGGGCGCGG ACGTTATGCG CATCGACAAT
TGTGTGCTAC TTGAGCCGAT GTATGAACCG ATTGCTTACG CCTATCGGCG GTTGCTCGGA
TGCCCTATTG CCTCGTCGCG TGAACTGGTC AACCCGTTGG GACCGGTGCA ACTGAAAATG
CGTCCGGTTC CGCTCGCTGT TCAGCGTTTC GAGCGCGGCA TCATGCTCTG GGTGCGGCGA
TGGGGCGATG CGCCGATCCT GCCCGAAATC TTTGTTCTTA CTGCTGATTC GAGCGACCCC
CAGCGTTTCA CCTGGCAGAT GTTTGCCGAT GAATGGCAAG AAGGAACACC GATACGGTTC
GACGAAATGC CTCCCGCCGG GAGGTATGCG CCGGAACGCG GCTTTGGCTA TGTATGGGTG
CATAATGCGG AAGTGCGGTC ACGTTTGGGT TGGGCCGTTG AACCGGAGCA GGGCGAAACA
GGCGGGTATC GGCAATTTGT CCGGGGATTT ATACTATCCC GTCCGTCGAA CGATACAGTG
TTCCTCTTTC TCGACAGCGG CGAGGCGCTC GTGGTTCCGC GGAGGAACTG A
|
|---|
| Protein sequence | MKWLDLFLIF CLSAVLIPQT GVAVGRERCF RETGYCISGP ILIYWERNGG LRVFGFPISN
QSIQTAEDRM LTVQWFERDR LEIQADGHVT AGRLGARYLE LQGRPWQTFP TVAQADPGCA
YFAVTGHQVC EPFLIYWRVR GGLERFGYPI TERMNEEIEG KVYQVQYFER RRMEYHPELA
GTPYEVLLGR LGADVMRIDN CVLLEPMYEP IAYAYRRLLG CPIASSRELV NPLGPVQLKM
RPVPLAVQRF ERGIMLWVRR WGDAPILPEI FVLTADSSDP QRFTWQMFAD EWQEGTPIRF
DEMPPAGRYA PERGFGYVWV HNAEVRSRLG WAVEPEQGET GGYRQFVRGF ILSRPSNDTV
FLFLDSGEAL VVPRRN
|
|---|
| |