| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4211 |
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| Symbol | |
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| ID | 5541722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5446724 |
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| End bp | 5448292 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640896318 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001434256 |
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| Protein GI | 156744127 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.185796 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCGA CAGAACCGCT CAATTTCATG CCGCTCGATC TGGACACGTT CAACGGAAGC
GAGCGATTCA TGGCGGGGAC GCGCCTGGGG GCGGCGTTTG GACAGGGCAT TCGCGCCTAC
CTGCGCGCTG ATTACGCAAA TGCGATCGAG CACTTCAAGG CTGCGTTGAT CGCCGCCTAT
ATCGAGGGAG AAGAACGTGC TCAGATCTAT GATCGCGAAC GTGCGATCAT CTATCTCTAC
ATCGGTAATG CACTGGCGTA CCAGGAGGAT TGGGAAGGAG CGCTGCGCGA GTATCTGGAA
GCGGTGCAGA CCGATCCGCA ACTGTCGGAG GCGCACTACA ACCTGGGCGT GGCATTTGCC
GCGCAGGGGC GTCTTGATCG TGCGATTGCC GCGTTCAAGG AAGCCATCGA GCATAATCCG
CGCCTGTACG AAGCGCACTT CTCGCTCGGA CGCTGCTATC AGCGTCTCGA CGACGCCGGG
CGAGCGTATA TTCACTACGA CCAGGCATGT CAGGCGCGTC CTCAGGCGGC CGAGCCGCGC
TACTACATGG GGTTGATGCA CCAGAGCCAC GGCGCGCACG AACTGGCGCA GCGCTGTTTC
GCCGAAGCGT TGCGCGTCGA GCCAACCTTC GTCTCGCCGG AGTTGCAGGA CGAAGTGCTG
GTCAATCGCT CGGAAGAAGA AGTCGCTCAG TGGTACTACC GCCTCAGCAA CGATCTGAAG
CAGCAGGGGT ACGAAGAGGA GGCGGAGCGG ATCTACCGGG CATTGCTCCA GTGGCGGCCA
GAAGAACACT ATGCGCGCTA TTTGCTCGGC AACCTGCTGG CGCGCGCGCG GCGGCTCGAT
GAGGCGCTCG AAGAGTATGC TCAGATCCCG CCACAGGATA AATATTATGT CGATGCGCGT
ATTCGTATCA GTGCTATTCT CAAGTTGCAG AACAAAACAC GCGAGGCGTA TGACACCCTC
TTCGAGTGCG CCAGGCTGCA CCCTGCCAAC GGTCAGTTGT TTCTGAACAT GGGCAAGCTC
CTCTACGATA TGAACAAACA TGCGGGCGCT ATCAAGGCAT TCGAGCGCGC GGTGCAGTTG
CTCCCCAACG ATCCGCAGGC GCACTATCTG TTGGGGTTTA TGTACAACCT GATGGGTCGC
GAGGGGTGGG CGCTGGCAGC CTGGCGCAAG GCGGTCGAAC TTGCGCCGGA CGCGCATTCG
CTGCGCTACG ACCTCGGCTA TATGTATGTG CGACGCAATC GCTACGATCT GGCGGCGAAA
GAGTTTGCGC GCGTGCTCCA ATTCTGGCCC GACGACGTCG AAACGAACTT TATGCTTGGG
TTGTGCTACA AAGAATTGAT GGAACCGGCG CGCGCCATTC CGCTGTTCGA GAAAGTGCTG
CGACGCAATC CGCGCCACGT GCAGGCGCTC TACTATCTGG GCGCATCGTA CTTGCAGATC
GGCAACACCT CGCTGGGGAA AGCCTATCTC AGACGCTACG ACTACCTGGC GAGCCAGGAG
CAGACAAGCC CGCCCACGAC GCGTCGCGCG ATGCGGCAAC GCAGCGTCGG GATGGTCGGT
TCATCGTGA
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| Protein sequence | MSSTEPLNFM PLDLDTFNGS ERFMAGTRLG AAFGQGIRAY LRADYANAIE HFKAALIAAY
IEGEERAQIY DRERAIIYLY IGNALAYQED WEGALREYLE AVQTDPQLSE AHYNLGVAFA
AQGRLDRAIA AFKEAIEHNP RLYEAHFSLG RCYQRLDDAG RAYIHYDQAC QARPQAAEPR
YYMGLMHQSH GAHELAQRCF AEALRVEPTF VSPELQDEVL VNRSEEEVAQ WYYRLSNDLK
QQGYEEEAER IYRALLQWRP EEHYARYLLG NLLARARRLD EALEEYAQIP PQDKYYVDAR
IRISAILKLQ NKTREAYDTL FECARLHPAN GQLFLNMGKL LYDMNKHAGA IKAFERAVQL
LPNDPQAHYL LGFMYNLMGR EGWALAAWRK AVELAPDAHS LRYDLGYMYV RRNRYDLAAK
EFARVLQFWP DDVETNFMLG LCYKELMEPA RAIPLFEKVL RRNPRHVQAL YYLGASYLQI
GNTSLGKAYL RRYDYLASQE QTSPPTTRRA MRQRSVGMVG SS
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