| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4155 |
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| Symbol | |
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| ID | 5541666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5377329 |
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| End bp | 5378744 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640896266 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001434204 |
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| Protein GI | 156744075 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.55327 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATCGAT TTCGTTTTTC GCGCAGCGGC GCGAACAATG CACAGCAATC AGCCAATGCC
TCACCTTTCG ACGATCTGCG CTCACCGGTC GAATCGGTAC GCCCTGTTGC GCCACGATCG
CCGGTTCCGC CATCGCTCCA CGACGACACC CGTGACGAAC GCGATCTGAT CGAAGCAGTG
CAATCGCAGT TGATCAACGA AACCGACACC AGCGGTCGGC GCGAGCCGGA ATACTACGCT
CGCCGCATTG CCGAACTGGT GACCGAGCAC CTCGAACAAA GCGGACGCGT CGTTTCTGAG
CGTGAGCGCA ACCGCCTGAT TCGCCTGGCA CAGTCCGAAC TGCTTGGGCT TGGTCCGCTC
GAACCGCTGC TCGCCGACGA TACCGTCAGC GAGATTATGG TCAACGGTCC GCATCAGATT
TGGATCGAGC GCAACGGCAA GTTGCAGGAG ACCGACGCCC GCTTCATCGA CGAAGATCAC
GTGCGACGCA TTATCGACCG GATCATCTCG CCACTCGGTC GGCGCTGCGA CGAAACGACG
CCAATGGTTG ACGCGCGCCT GCCCGACGGC TCGCGCGTCA ACGCGATCAT TCCACCGCTG
GCGATCAACG GCAGCACGAT CACCATCCGC AAGTTCTCGC GTATTCCGTT GACTGCCACT
GACCTGATCA CACGTGGGAC AGCATCGCCA GAACTGATGG AACTGCTGCG GGCATGCGTG
CTCGGACGGC TCAACTGCAT CGTTGCCGGC GGCACCGGAA CCGGCAAGAC TACAATGCTC
AATGTGCTTT CGTCGTTCAT CCCCGACGAT GAGCGCATCA TCACCATCGA GAACGCCGCC
GAACTCCAAC TTCAACAGCG CCATGTCGTC ACCCTCGAGT CGCGCCCCGC CAATATCGAA
GGGCGCGGCG AAGTAACCAT GCGCGATCTG GTCGTTAATG CGCTGCGCAT GCGCCCGGAT
CGGATCGTCG TTGGGGAGTG TCGCGCGGGT GAAGCACTCG ACATGCTCCA GGCGATGAAT
ACCGGGCATG ATGGTTCGAT GACCACGTTG CATGCCAACA GCCCGCGCGA CGCACTGCGC
CGCATGGAAA CGATGGTTAT GATGGCGGGC ATGGACCTGC CGCTGCGCGC CATCCGCGAA
CAGATTGCAT CGGCGATCCA CGTTATTATT CAGCTTGAAC GTCTCCAGGA CGGTTCGCGC
AAGATTGTGC AGGTCTGCGA AGTCACCGGG ATGGAGAACG ATGTTGTCTC CCTCTCAGAT
CTGTTCGTCT TCCAGCAGCA GGGGGTGCGC GACGGCAAAG TCGTTGGACG GATCGTGCCG
ACGGGCATTC GACCACGGTT CCTCGAAAAG TTGCAACAGA TGAATATCAC GTTGTCACCG
CAGGTGTTCG GCGCCGTTAT TCCAGGCGTT CGCTAG
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| Protein sequence | MNRFRFSRSG ANNAQQSANA SPFDDLRSPV ESVRPVAPRS PVPPSLHDDT RDERDLIEAV
QSQLINETDT SGRREPEYYA RRIAELVTEH LEQSGRVVSE RERNRLIRLA QSELLGLGPL
EPLLADDTVS EIMVNGPHQI WIERNGKLQE TDARFIDEDH VRRIIDRIIS PLGRRCDETT
PMVDARLPDG SRVNAIIPPL AINGSTITIR KFSRIPLTAT DLITRGTASP ELMELLRACV
LGRLNCIVAG GTGTGKTTML NVLSSFIPDD ERIITIENAA ELQLQQRHVV TLESRPANIE
GRGEVTMRDL VVNALRMRPD RIVVGECRAG EALDMLQAMN TGHDGSMTTL HANSPRDALR
RMETMVMMAG MDLPLRAIRE QIASAIHVII QLERLQDGSR KIVQVCEVTG MENDVVSLSD
LFVFQQQGVR DGKVVGRIVP TGIRPRFLEK LQQMNITLSP QVFGAVIPGV R
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