| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4139 |
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| Symbol | |
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| ID | 5541650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5358374 |
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| End bp | 5360194 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640896250 |
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| Product | ABC-2 type transporter |
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| Protein accession | YP_001434188 |
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| Protein GI | 156744059 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.795712 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00294376 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCATGG CACGTCTTGC AGCGCCTGCA ACCTGGATCG TGGCATTGAG TCGCCAACGG
GGACCATTGC GTCTTTACCA GTGGCTCTGG CTGCTGGTAT GTGCGCTGGG TGCGCTGGCT
GCGGCTGCGC CGCGCATTCT TTCGCAGCCG ATCCGTTATG AAACGGTCGC GACGGTGCAG
ATTGACGCCG TTGGGCGCTA CCATGAGTTG TATACCGACG GTCAACCAGA CGATGATTAC
CGCGCTGTTG AGATGCAGGC GTTTGAGTTG CTCAGGGCGC GCCGCCCTGA CCTCGGCGGT
CCAACGTATG CGGTGCGTTT TGTGCCGTAT TCTGATGGGC GGGTCGAGAT CATTGCCATC
GGGCGCGCGC CGCTCGAAGC GCAAGTGGTG GCGGACGAAG CGGCAGAAAC GTTGGCGCGC
GCGGTACGCG CCGCCGGTGG GCGCGAGATT CTGCGTAATC TGATGGGCTG GGAACTGACC
GAAGCGCTCC AGGGTCGCCA GCCGGAAACA GCATTTCAGC GCCTGTTGCG CGAAATTATT
CGGACGCAGG CGTTTCCCCT CAACCGGGCG GTCGAACCGG TATCGGCGTA TATTACCGTT
GATCAACTGC CGCAGGAAGA GTTGAGCGAC CTGGCTCGCG CCCTGGAAGT GCGCGAGGCG
CAGTTGACCC GTATCGATAT TCCTGCGCTG GAAATACGCC GCACCACGGC GACCGGTGCG
ACGCTCCAAC AGATCGACGC CGACCTGTTG CGGTTGACGG CGGGGCGGCA GGCGATCCGC
GAAGCGCTGG CGTATCTGTA CCGTAATCTG GGAGCAGCCT TCGCTCCCGA CGCGCCGGGT
GATGCCTATC GCGCCAGCCG CGCACCGCTG CCGGAACGTG CCGTTGATCG GCGTATTCCG
CTCCTTCTTT CACTGGCGAC GGTTGTCGGA GTGCTGTTCG GCGCGGCTGG CGTGGCGATT
GATCGGAGCG CCGGCGCGAT GCGCAAAGTC CTCGAACTTT GGGCGTATCG TGAACTGATC
CGCAACCTGG TGCTGCGCGA TTTGCAGGTG CGTTATAAAG GAAGCGCGCT CGGGTATCTC
TGGACGCAAC TCGCACCCCT CCTGCTGATG CTGGTCTTCT GGTTTGTCTT CAGCGCCTTC
TTTCAGGCGG ATATCGCCAT GTTCCCAGTG TTCCTTCTGG TCGGCTTGCT GCCCTGGAAC
TTCGCCAGCG AGGCGGTGAA CGGTGGGGCG CGCAGTGTGA TCGACAACGC CGCGCTGGTC
AAAAAAGTGT TCTTCCCGCG CGAGGTGCTG CCGCTGGTCG CGGTGCTCTC CAGCCTGGTG
AATTTTGTGC TGTCGCTGCC GATGCTGCTG CTGGTGATGG CGGCGGTTCA GTGGATGTAT
GCGCCGCTGC GCGCTATCGG CGCCTGGACG AACTTCTCGT GGACATTTGT GTATCTGCCG
GTGTTGATCG GCATTCAAAC TATTTTTCTG GCAGGAGTGG CATTGTTCCT CAGCGCACTT
GCGGTGCGCT ACCGCGATAC GGTCCACCTG ATCGGCATTT TCATTCAGTT CTGGTTTTTT
CTTACACCGG TCATCTATGC ACTCGACCGG GTCGCCGGTC CGTTGGCGCA GCTGGTGCGC
TGGCTGAACC CGATGGCGTC GCTGATCGAG TTCTACCGCG AAATCCTGTA TGGCAACGCG
GTTGCGTTCG GTCAGATTCC TACGCCAAAC CTGCCTGCGC TCGACAGTGT GCTGCGCGTT
CTGCTGACCG CCTTCGCAAC GCTGGCGATC GGCTATTGGT ACTTCCAGCG CCGTAGCGGT
GAGTTCGGAG AACGGTTGTA G
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| Protein sequence | MSMARLAAPA TWIVALSRQR GPLRLYQWLW LLVCALGALA AAAPRILSQP IRYETVATVQ
IDAVGRYHEL YTDGQPDDDY RAVEMQAFEL LRARRPDLGG PTYAVRFVPY SDGRVEIIAI
GRAPLEAQVV ADEAAETLAR AVRAAGGREI LRNLMGWELT EALQGRQPET AFQRLLREII
RTQAFPLNRA VEPVSAYITV DQLPQEELSD LARALEVREA QLTRIDIPAL EIRRTTATGA
TLQQIDADLL RLTAGRQAIR EALAYLYRNL GAAFAPDAPG DAYRASRAPL PERAVDRRIP
LLLSLATVVG VLFGAAGVAI DRSAGAMRKV LELWAYRELI RNLVLRDLQV RYKGSALGYL
WTQLAPLLLM LVFWFVFSAF FQADIAMFPV FLLVGLLPWN FASEAVNGGA RSVIDNAALV
KKVFFPREVL PLVAVLSSLV NFVLSLPMLL LVMAAVQWMY APLRAIGAWT NFSWTFVYLP
VLIGIQTIFL AGVALFLSAL AVRYRDTVHL IGIFIQFWFF LTPVIYALDR VAGPLAQLVR
WLNPMASLIE FYREILYGNA VAFGQIPTPN LPALDSVLRV LLTAFATLAI GYWYFQRRSG
EFGERL
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