| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4135 |
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| Symbol | |
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| ID | 5541646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5352339 |
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| End bp | 5354291 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640896246 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001434184 |
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| Protein GI | 156744055 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.479739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000143987 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCGAGA ACACGTCTGG CGGGTCATCG CGGCGAAAGA TGACCCGACG GGAGTTATCT
GCTCGCTACG ATGAACTTCG CCGGCATTCG GCGCACCTGC GCGCTGCACT GTACAGTATC
GGCGATGCCG TCATTATCAC AAACATCGAT GGGCGCATCA GTCTGATGAA TCCTACTGCT
GAGCGCCTGA CCGGATGGGC TGAGCCTGAA GCGCTGGAAA GTCCGATCGA ACAGATCTTT
CGGATTGTGG ATGAAGAAAC CCGCGCGATG CTCGAAAGTC CGGTGGCGCG GGTCTTGCGC
GAAGATGCCG TCGTGCGATT GAGTCCGCGC GCGGTGTTGA TCAATCGCAA CGGGCGCGCC
ATTCCGATTG GCGACACAAG CGCTCCCATC CGCACCGAAT CCGGAGACGT CACCGGTGTT
ATTCTGATCT TCCAAGACCA AACATCGGTG CGAACTACCT TCCATGCCGT ACAGCAGGCG
CGCGAGTTCG CCGAGAACAT CGTTGCTACG GTTCGTGAGC CGTTGCTCGT TCTTAGTCGC
AACCTGCGCG TGGTCTCTGC CAATCGTGCT TTCTATCAGA TGTTTCACAC CACTCCCGCC
GACACACTTC ATCAGCACAT TTACGAGATT GGTAATCGTC AGTGGGACAT TCCTGAATTA
CGGCGGTTGC TGGAAGAGAT TCTGCCGCAC AATGCGCATT TCGACGGATA CGAGGTGACG
CACAATTTTG AGCATATCGG TCAGCGCACT ATGCTGCTAA ATGCGCGCCG CGTTCGGCAT
TCCGATGAAT TCATCCTGCT GGCAATCGAA GACGTGACAG AACGGGTGCG CGCAGAGCAA
CGATTGCACA TGCATCTTCG GCGGCTACGC GCATTGCGCA CCATCGATCA GGCCATCATT
TCCGCCCTCG ATATGCGGGC AGTGCTCGAT ATTCTGCTCG ATCAGGTCAC TTCGTACCTG
TACGTGGATG CTGCTTCCAT CCTGCTGCTC GATCCATATG CGCAAACGCT CACCTATGCG
GCTGAGCGTG GTGTGCGATC ACGCGCGAAC CAGCGCACGA CGTTGTATAC GGGCGAAGGG
TATGCCGGTC GGGTCGTGCT TGATCGGCGG ATGCTGTTCA TCGCCGACCT CCGCGAGTCG
GAGTTGGAAC CCTCCTATGC GCCTGTGCTG CAACAGGAAG CGTTTGTGAC CTATTGTGGC
GTCCCGCTGA TTGCGAAAGG TCAGGTGAAG GGTGTGCTGG AACTCTTTCT CCGCACCCGG
CTCGATCCCG ATCAGGACTG GTTCGATTTT CTGGAGACGC TGGCAGTGCA GGCAGCGATT
GCAATCGACA GCGTCATTTT GTTCGAGACA ATGCAGCGCT CGAACGCGCA GATGATTCTG
GCATATGAAG CAACGATCCG GGGATGGGCG CACGCGCTCG ACTTGCGCGA CCGGGAGACG
GAAGGGCATT CACAGCGAGT CACAGATCTG ACGGTGCGGC TGGCACGGGC GGCAGGTCTG
AGCGATGAGC AAATTGCCCA TATTCGCCGT GGCGCGTTGC TCCACGATAT TGGCAAACTC
GGCGTACCCG ACTCAATTCT GCGCAAGCCC GGTCAACTGA CGGAAGAAGA ATGGGCGGTA
ATGCACCAGC ATCCCGATTA CGCTTACACG ATGCTCTCTC CTATCGAATA CCTGCGCCCT
GCGCTGGATA TTCCCTACTC CCATCATGAG CGATGGGACG GCACGGGGTA TCCACGCGGC
TTGAAAGGTG AGCAGATTCC GCTGGCGGCA CGTCTCTTCG CTGTGGCGGA TGTATGGGAT
GCGCTTCAGT CCGACCGTCC GTATCGTGCG CGCTGGCAAC GCGAAGAGGC GCTTGACTAT
ATTCGATCAC AGGCAGGAAC GCACTTCGAT CCCGATGTGG TCGCTCTTTT TTTGAAGGTC
ATCGGTGAAG CGCCGGACGA TGCTGCTCCC TGA
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| Protein sequence | MPENTSGGSS RRKMTRRELS ARYDELRRHS AHLRAALYSI GDAVIITNID GRISLMNPTA
ERLTGWAEPE ALESPIEQIF RIVDEETRAM LESPVARVLR EDAVVRLSPR AVLINRNGRA
IPIGDTSAPI RTESGDVTGV ILIFQDQTSV RTTFHAVQQA REFAENIVAT VREPLLVLSR
NLRVVSANRA FYQMFHTTPA DTLHQHIYEI GNRQWDIPEL RRLLEEILPH NAHFDGYEVT
HNFEHIGQRT MLLNARRVRH SDEFILLAIE DVTERVRAEQ RLHMHLRRLR ALRTIDQAII
SALDMRAVLD ILLDQVTSYL YVDAASILLL DPYAQTLTYA AERGVRSRAN QRTTLYTGEG
YAGRVVLDRR MLFIADLRES ELEPSYAPVL QQEAFVTYCG VPLIAKGQVK GVLELFLRTR
LDPDQDWFDF LETLAVQAAI AIDSVILFET MQRSNAQMIL AYEATIRGWA HALDLRDRET
EGHSQRVTDL TVRLARAAGL SDEQIAHIRR GALLHDIGKL GVPDSILRKP GQLTEEEWAV
MHQHPDYAYT MLSPIEYLRP ALDIPYSHHE RWDGTGYPRG LKGEQIPLAA RLFAVADVWD
ALQSDRPYRA RWQREEALDY IRSQAGTHFD PDVVALFLKV IGEAPDDAAP
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