| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4115 |
|---|
| Symbol | |
|---|
| ID | 5541626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5327375 |
|---|
| End bp | 5327650 |
|---|
| Gene Length | 276 bp |
|---|
| Protein Length | 91 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640896227 |
|---|
| Product | phosphotransferase system, phosphocarrier protein HPr |
|---|
| Protein accession | YP_001434165 |
|---|
| Protein GI | 156744036 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1925] Phosphotransferase system, HPr-related proteins |
|---|
| TIGRFAM ID | [TIGR01003] Phosphotransferase System HPr (HPr) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.556277 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0145847 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAGC GAGTGGTCAG GATTCGGCAT CCCCTTGGGC TGCATGCGCG TCCGGCAGCA
GATTTTTACC GCAAGACGCG CGAGTTTCGC AGCCGAATTA CGGTACGAAA TATCAGCCGG
AGATTTTCGG TCGAGCTGCC GGTCAGCCCG TTGAATTTGC TGCAACTTGG CGCAGCGCAG
GGGCATCAGG TATTGATCCG CGCCGAGGGT GAAGATGAGC GTGAAGCCGT GACGGCGCTG
GCCAGATTGC TCGACCAACT CGCAGCCGAG GAATAA
|
|---|
| Protein sequence | MEERVVRIRH PLGLHARPAA DFYRKTREFR SRITVRNISR RFSVELPVSP LNLLQLGAAQ
GHQVLIRAEG EDEREAVTAL ARLLDQLAAE E
|
|---|
| |