Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4067 |
Symbol | |
ID | 5541578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5279387 |
End bp | 5280676 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640896179 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001434117 |
Protein GI | 156743988 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.220594 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATCTA TCGAGGAACC AACCGCTGAA ATCGAACGCC TGCGCCGGCG CGTTGCCGAA CTCGAAATGA TATTGGAGCA ACGACGGCAG GACGATGAAG CAATCGAACG CCTGCGCGCA ATTATCGAAA ACACGCCGGA CGTTATCAGC ACTGCTGATG CAGAAGGGCG GGTTGTGTAC ACAAATCAAG CGGGGCGGCA GTTGTTCGGT ACACCGGACG ATACGCCACG AAGCGACCAT CGTATTCCAC AATTCCATCC CGACTGGGCT GCGGATCTGA TCCTCAACGA AGCCCTGCCC CACGCAGCGC GCGAAGGGCG CTGGAGCGGC GAAACCGCCG TGTTCGACGC GCAAGGGCGA GAGATTCCGG TAGCGCAGGT CATTATCGCG CACAAGAATG CATCGGGCGA GGTGACACAC TTCTCGACTG TTCTGCGCGA CATCAGTGAA AGCAAGCGGG TCGAAGCCAC GCTGCGCGAA AGCGAGCAGC GTTTGTTGCG CTTCCTTGAT GCGCTGCCGG TCGGCGTCTT CGTCGTCGAA CCTGATGGAC GCCCCTTCTA TGCCAATCGC AGCGCCATTG AGTTGCTGGG CAAGGGCATC ATGCCGGAAG CCACGACCGA TCAGCTTGCC GAAATCTACC GCGCCTTCGT CGCCGGAACC GATCAACCCT ATCCTACCGA GCGCATGCCG CTGGTACGCG CGCTGCACGG TGAAGCATCA TCCGTCGATG ATATGGAGAT CGAACGCCCC GATGGTCGAG TGCTCATCGA AATCCACGGC GCGCCGATCC GTGATGTTGA GGGACGAATC GTCTATGGCA TGGTTGCATT TACCAACATC ACGATGCGGC GGCGCGCCGA GGAAGCCATC CGCGAACGCG CTATGCAACA ACAGATCATC GAAGCGCAAC AGGCGGCATT GCGCGAACTG AGCACGCCAC TGATGCCAAT CGCCGAGGGG GTGGTCGTTA TGCCGATCAT CGGCTCTATC GACAGCCGAC GCGCCCAGCA GATCATGGAA ACGCTCCTGG AAGGCATCGC CGCACACAGC GCCGATATTG CCATCCTCGA CATTACCGGC GTTCGTGTCG TTGATACGCA GGTCGCCGGG GCGCTCGTCC GCGCGGCGCA GGCGGCGCGC ATGCTCGGCG CGCGCGTCGT GCTCAGCGGG ATCAGCGCCG AAATCGCGCA GACGCTCGTG CATATCGGCG CGGAAATGCA CGAGATGATT GCGCTCCACA GTTTGCAGCA GGGTATCGCT TATGCGCTGG AACAACGTCA GGCACTCTAA
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Protein sequence | MSSIEEPTAE IERLRRRVAE LEMILEQRRQ DDEAIERLRA IIENTPDVIS TADAEGRVVY TNQAGRQLFG TPDDTPRSDH RIPQFHPDWA ADLILNEALP HAAREGRWSG ETAVFDAQGR EIPVAQVIIA HKNASGEVTH FSTVLRDISE SKRVEATLRE SEQRLLRFLD ALPVGVFVVE PDGRPFYANR SAIELLGKGI MPEATTDQLA EIYRAFVAGT DQPYPTERMP LVRALHGEAS SVDDMEIERP DGRVLIEIHG APIRDVEGRI VYGMVAFTNI TMRRRAEEAI RERAMQQQII EAQQAALREL STPLMPIAEG VVVMPIIGSI DSRRAQQIME TLLEGIAAHS ADIAILDITG VRVVDTQVAG ALVRAAQAAR MLGARVVLSG ISAEIAQTLV HIGAEMHEMI ALHSLQQGIA YALEQRQAL
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