Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4052 |
Symbol | |
ID | 5541563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5256431 |
End bp | 5260009 |
Gene Length | 3579 bp |
Protein Length | 1192 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640896165 |
Product | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein |
Protein accession | YP_001434103 |
Protein GI | 156743974 |
COG category | [C] Energy production and conversion |
COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0539236 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGGA GTTGGGTCAC GCTGGAAGGC AATGAGGCTG CCGCCAGCAT TGCGTACCGC TTGAGCGAAG TCATTGCGAT CTATCCCATC ACACCCTCAA CGCCCATGGG CGAACTGGCG GATGCCTGGG CTGCCGCCGG AAAGCCCAAT CTGTGGGGCA CGACGCCGCT AGTCATTGAG ATGCAGTCGG AAGGCGGCGC GGCCGGTGCA TGCCATGGGG CGTTGCAGCG CGGCGCGCTG ACAACGACGT TCACCGCATC GCAGGGGTTG TTGTTGATGA TTCCAAATAT GTATAAGATC GCCGGGGAAC TGACGCCGAC GGTCTTTCAT ATTGCGGCGC GCTCAATTGC GGCGCACGCG CTGTCGATCT TCGGCGATCA TCAGGATGTG ATGGCAGTGC GGCAGACCGG TTGGGCGCTG CTGGCATCGT CGTCGGTGCA GGAAGCGCAC GACCTGGCGC TGGTGGCGCA TGCCGCGACG CTGAGGGCGC GGGTGCCGTT CCTTCACTTC TTCGATGGCT TTCGCACGTC GCACGAGATC AATAAGATCG AGCAACTGAC GGATGACGAC CTGCATGCGA TGATCGATCC CTCGTTGATC GAAGCGCATC GCTTGCGAGC GCTCAGCCCT GATCGTCCGG TTATCCGCGG TACGGCGCAG AACCCCGATG TCTACTTCCA GGCGCGCGAG ACGGTCAACC CCTTCTACGC CGCCACACCC GGCATCGTCC AGGAGACGAT GGAAAAGTTC ACGCAGTTGA CGGGGCGTGC CTATCATCTG TTCGATTACA CCGGCGCGTC GGACGCCGAG CGCGTGATCG TGATCATGGG GTCTGGCGCA GAAACAGCGC GCGAGACGGC AAAGTTTCTG GCAGAGCGCG GCGAGAAGGT CGGCGTGGTG ACGGTGCGCC TCTATCGCCC GTTTTCGGTG GCGCACTTCG TGGCGGCATT GCCGACGACA GTGCAGCGCA TCGCAGTGCT CGACCGCACG AAGGAGCCTG GGAGCAGCGG TGAGCCGCTC TATCTCGATG TGGTGACGGC AATGGCGGAG AGTGGACGCC ATCTGCCGGT GATCGGCGGT CGGTACGGTT TGTCGTCGAA AGAATTCACT CCCGCGATGG CGAAGGCAGT CTTCGACGAA CTGGCGAAGG ATCAACCGAA GAACCATTTC ACTGTGGGCA TTGTCGATGA TGTGGGATAC ACCAGCCTGG ATTACGATCC TTCGTTCTCA ATCGAGTCGC CGCGCACGGT GCGCTGCCTG TTCTACGGTC TTGGCGCGGA TGGCACGGTC GGCGCCAACA AGAACTCGAT CAAGATCATC GGCGAAGAAA CCAATAACTA CGCGCAGGGA TACTTCGTCT ACGACTCGAA GAAATCCGGT TCGATGACCG TCTCACATCT GCGCTTCGGT CCCGAACCCA TCCATGCGCC CTATCTGGTT GATCGAGCGA ACTTTGTCGC CTGCCATCAG TTCTCGTTCC TGGAGCGCAT TGATGTGCTC AAGGCGGCGG AGCCGGGCGC GGTCTTCCTG CTCAACAGCA TGTATGGACC GGACGAGGTC TGGTATCATC TGCCGCGTGA AGTGCAGGAC GATATTGTGC GCAAACAACT GAAGTTCTAC GTGATCGACG GTGACCGGGT GGCGAAAGAG AGCGGCATGG GGCGCCGGGT GAATACCGTG ATGCAGACGG CGTTCTTTGC GATCTCCGGG GTTTTGCCGC GTGAGGATGC TATTGCGGAG ATCAAGCGCA GCATCAAGAA GACGTATGGT AAGCGCGGCG AGGCAGTGGT GCAGCAGAAC TATCGCGCAG TCGATGCCGC CCTTGCACGC CTGTACGAAG TCGATGTTGA GAAGTTCGCC GGGTTCCGCT CACCGAAGAC GCGCCGACCG CCGGTGCCCG ACCATGCGCC CGACTTCGTC AAAGAGGTGC TTGGTCCGAT GATTGCCTAC GAAGGCGACT CACTGCCGGT GAGCAAACTG CCGGTCGATG GGACCTTCCC CACCGGCACG GCAGCCTGGG AGAAGCGCAC GATTGCGCTG GAGGTGCCGA TCTGGGAGCC GGATATTTGC ATTCAGTGTG GCAAGTGTGC ATATGTTTGC CCGCATGCCG TCATTCGCAC CAAAGTGTAC GAACCGGCGC TGCTCGAAGG TGCGCCCGAA ACCTTCCTCA GCAGTGAGGC GAGATTCAAG GAGTTCCCCG GATACAAGTA CACGCTGGCG ATTTCTCCCG AAGATTGCAC CGGTTGCGGT TTGTGCGTCG AAGTCTGTCC GGCAAAGGAT AAGCGGCAGG TAGGGCGCAA GGCGATCAAT ATGAAGCCGC TGGTCGAGGT GCGTGAGCGT GAAGTGCGCA ATTGGGAGTT CTTCCTGACT ATCCCCGATA TTCCACGCAC TGCCATGCAT CCGGGTTCGA TCAAGAACTC ACAGTTGCTC CTGCCACTGT TCGAGTTCTC CGGCGCATGT GCGGGGTGCG GCGAGACACC GTACATCAAA CTGTTGACCC AACTGTTCGG CGATCGCCTG TTGATTGCCA ATGCAACCGG TTGTTCATCG ATCTACGGCG GCAACCTGCC GACGACGCCG TACACGAAGA ATGCTGAGGG GCGTGGTCCT GCGTGGAGCA ACTCACTCTT CGAGGATAAT GCCGAGTTCG GGCTTGGCAT GCGTCTGGCG CTCGACCAGC AGATTGCGCA CGTGCGTGAA CTGCTGCCGC TGTTCGCGCC GGTCGTCGGG CAGGACCTGG TAGACGCGCT GTTGAACGCC GACCAGAGCA CCGAGGCGGG GATCGCGGCG CAGCGCGAGC GCGTTGAGTT GCTCAAGCAG CGCCTGCACA CGCTCGACCG CAGTCAGTTC CCGGATGTGG TCGAGCGCGA GCACGAACTT CTCAGCCTGG CGGATGTCCT GGTCCGAAAG AGCGTCTGGA TCGTCGGCGG CGATGGTTGG GCATACGACA TTGGCTATGG CGGGCTCGAC CATGTGCTGG CATCGGGGTA CAACGTCAAT GTATTGGTGC TCGACACTGA GGTGTACTCG AACACCGGCG GGCAGGCGTC GAAAGCGACG CCGATCGGCG CAGTCGCTAA GTTTGCCGCC AAAGGTAAAT CGGCGCCGAA GAAGGACCTT GGTCTCATTG CGATGGCATA CGGCAACATC TACGTGGCAC GGGTGGCGAT GGGCGCCGAT GATGTGCAGA CGCTGCGCGC TTTCATGGAG GCGGAAGCGT ATGAAGGACC ATCCCTGATC ATTGCGTACT CGCACTGCAT CGCCCACGGC ATCGATATGC GCAAAGGTCT CGAGCAGCAG AAACTGGCGG TTCAGACCGG TTACTGGCCG CTGTACCGCT ACAACCCGAT GCTGGCAGCC GAAGGGAAGA ATCCGTTGAT TATCGACTCG AAAGACCCGA CGCTGCCGCT TGAGAAGTTT GTCTACAACG AGACACGCTA TCGCATGCTG ATGCAGAGCG ACCCGCATCG CGCGGAGGAT CTGCTGCATA AGGCGGAGGC GTCGGTGCGT GCGCGCTGGC AGCATTACAA GGAACTGGCA ACGCTCAGCG AGGTGAAGGC GGAGCACGAT GGGCATTGA
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Protein sequence | MKRSWVTLEG NEAAASIAYR LSEVIAIYPI TPSTPMGELA DAWAAAGKPN LWGTTPLVIE MQSEGGAAGA CHGALQRGAL TTTFTASQGL LLMIPNMYKI AGELTPTVFH IAARSIAAHA LSIFGDHQDV MAVRQTGWAL LASSSVQEAH DLALVAHAAT LRARVPFLHF FDGFRTSHEI NKIEQLTDDD LHAMIDPSLI EAHRLRALSP DRPVIRGTAQ NPDVYFQARE TVNPFYAATP GIVQETMEKF TQLTGRAYHL FDYTGASDAE RVIVIMGSGA ETARETAKFL AERGEKVGVV TVRLYRPFSV AHFVAALPTT VQRIAVLDRT KEPGSSGEPL YLDVVTAMAE SGRHLPVIGG RYGLSSKEFT PAMAKAVFDE LAKDQPKNHF TVGIVDDVGY TSLDYDPSFS IESPRTVRCL FYGLGADGTV GANKNSIKII GEETNNYAQG YFVYDSKKSG SMTVSHLRFG PEPIHAPYLV DRANFVACHQ FSFLERIDVL KAAEPGAVFL LNSMYGPDEV WYHLPREVQD DIVRKQLKFY VIDGDRVAKE SGMGRRVNTV MQTAFFAISG VLPREDAIAE IKRSIKKTYG KRGEAVVQQN YRAVDAALAR LYEVDVEKFA GFRSPKTRRP PVPDHAPDFV KEVLGPMIAY EGDSLPVSKL PVDGTFPTGT AAWEKRTIAL EVPIWEPDIC IQCGKCAYVC PHAVIRTKVY EPALLEGAPE TFLSSEARFK EFPGYKYTLA ISPEDCTGCG LCVEVCPAKD KRQVGRKAIN MKPLVEVRER EVRNWEFFLT IPDIPRTAMH PGSIKNSQLL LPLFEFSGAC AGCGETPYIK LLTQLFGDRL LIANATGCSS IYGGNLPTTP YTKNAEGRGP AWSNSLFEDN AEFGLGMRLA LDQQIAHVRE LLPLFAPVVG QDLVDALLNA DQSTEAGIAA QRERVELLKQ RLHTLDRSQF PDVVEREHEL LSLADVLVRK SVWIVGGDGW AYDIGYGGLD HVLASGYNVN VLVLDTEVYS NTGGQASKAT PIGAVAKFAA KGKSAPKKDL GLIAMAYGNI YVARVAMGAD DVQTLRAFME AEAYEGPSLI IAYSHCIAHG IDMRKGLEQQ KLAVQTGYWP LYRYNPMLAA EGKNPLIIDS KDPTLPLEKF VYNETRYRML MQSDPHRAED LLHKAEASVR ARWQHYKELA TLSEVKAEHD GH
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