Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4027 |
Symbol | rpsJ |
ID | 5541537 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5225648 |
End bp | 5225956 |
Gene Length | 309 bp |
Protein Length | 102 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640896139 |
Product | 30S ribosomal protein S10 |
Protein accession | YP_001434078 |
Protein GI | 156743949 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0051] Ribosomal protein S10 |
TIGRFAM ID | [TIGR01049] ribosomal protein S10, bacterial/organelle |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000005274 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCGAAAC AAAAGGTTCG CATCCGACTC AAGGCATACG ACCATAAGAT TCTCGATCAA TCGGCGCGAC AGATCGTTGA GGCTGCGGAA CGCACCGGGG CGCTGGTTGC AGGTCCGGTG CCGTTGCCGA CCAAAATCGA AAAGTATAGC GTCATTCGTT CGCCATTTAT TGACAAAGAC TCGCAGGAAC AGTTTGAGAT TCGCACTCAT AAGCGCTTGA TCGATGTGCT CGATCCAAGC CAGCAGACGA TCAATGCGTT GATGAAACTC AATCTGCCGG CGGGTGTCGA TATCGAGATC AAGCTGTAA
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Protein sequence | MAKQKVRIRL KAYDHKILDQ SARQIVEAAE RTGALVAGPV PLPTKIEKYS VIRSPFIDKD SQEQFEIRTH KRLIDVLDPS QQTINALMKL NLPAGVDIEI KL
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