Gene Rcas_3996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3996 
SymbolrplM 
ID5541506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5209340 
End bp5209780 
Gene Length441 bp 
Protein Length146 aa 
Translation table11 
GC content59% 
IMG OID640896108 
Product50S ribosomal protein L13 
Protein accessionYP_001434047 
Protein GI156743918 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0102] Ribosomal protein L13 
TIGRFAM ID[TIGR01066] ribosomal protein L13, bacterial type 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000540909 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAACCT ACGCGCAGAA GGCGTCGGAG GTGCAGCGCG ACTGGTACGT GATCGATGCG 
ACCAACCAGA CTCTCGGCCG GCTCGCAACA CAGATCGCTA CCCTGTTGCG CGGCAAGCAT
AAGCCGACGT TCAGCCCCTA TATCGACGGC GGCGACTTCG TGATCGTCGT CAATGCCGAG
CGTATTCGTC TGACCGGCAG GAAGCCGGAA CAGAAAATGT ACTATCGCCA TTCGAATTAT
CCCGGCGGTT TTAAGGCGGT GTCGTTCAAG CAGTTGATTG CACGCCATCC TGAGCGTGTG
CTGCGTTTCG CCGTCAAGGG TATGCTGCCA AAAACCCGCC TGGGGCGACG GCAATTGGCG
AAACTGAAGA TCTATGCCGG ACCAAAACAT CCGCACGCGG CGCAGCAGCC CAAAGTCTAT
GAACCGCGAC CGCGCGGCTA G
 
Protein sequence
MKTYAQKASE VQRDWYVIDA TNQTLGRLAT QIATLLRGKH KPTFSPYIDG GDFVIVVNAE 
RIRLTGRKPE QKMYYRHSNY PGGFKAVSFK QLIARHPERV LRFAVKGMLP KTRLGRRQLA
KLKIYAGPKH PHAAQQPKVY EPRPRG