Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3900 |
Symbol | |
ID | 5541406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5105465 |
End bp | 5106034 |
Gene Length | 570 bp |
Protein Length | 189 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640896011 |
Product | cold-shock DNA-binding domain-containing protein |
Protein accession | YP_001433954 |
Protein GI | 156743825 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000124121 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.525075 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTCA AGGACAGGCA CATTCCGTGC AAGGATTGCG GCGGCGAGTT CGTATTCACG GCAGGCGAGC AGGAGTTCTA TGCCCAGAAG GGATTTACCA ATGATCCCAC CCGTTGCCCG GCAGGGCGTC GAGCACGCAA GGAAGGGCGC AGTCTGATCG ATGTGGCGGG TGGTCGCGCA TGCCCGCACG ATGTGTCGGG GCAGGGGCGT ATCACCGACG AGGCTGCCGA AGTCAGCAGC AGCGCGCGTC CCCGGCGCTC GGACGATTGG GCGCGCTCAT ATGACCGACC GCGCAGCGAG TCGCGTGGCT GGTCGAGCGA CCGATCGCGG CGTGAGCGTG AACCGTACAC CGGTCCGCTG CCGTCGGGTC CGGTCAGCGC AACGGTTGTT CGCATTGATC CTGCCGGGCG CTTTCTCTTT GCCCGTGTCG ATAACCCACA GTTTGATGTG TATGTCCATG GATCACTGTT CAGTCAGGTG CGCCGATCAA TTCAGGAAGG CGATCAGATT TCGGTGACAG TCGAAGCAAG CGATCGTGGA CCTCGCGCGC GAACGTTTGA TCTGGTGTAG
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Protein sequence | MSFKDRHIPC KDCGGEFVFT AGEQEFYAQK GFTNDPTRCP AGRRARKEGR SLIDVAGGRA CPHDVSGQGR ITDEAAEVSS SARPRRSDDW ARSYDRPRSE SRGWSSDRSR REREPYTGPL PSGPVSATVV RIDPAGRFLF ARVDNPQFDV YVHGSLFSQV RRSIQEGDQI SVTVEASDRG PRARTFDLV
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