| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3833 |
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| Symbol | |
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| ID | 5541336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5008785 |
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| End bp | 5010983 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895943 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_001433889 |
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| Protein GI | 156743760 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACG CCGAAGCCCT TCAGTCTGAG AACGAAGCCC TGAAAGCGCG CATCCGCGAA
CTGGAACGCC GCCTGACGGA AGCACGCACT GCTCCCAATC GTCGTGCCAC CGAAGATGAC
GCCACTGCGT TCCACCAGAC GGCGCTGGCG ATCATGAACC GGCTCGATCT CAACAATGTG
CTGGAGGCAA TCGTAGCGCA TGCCGCGCAT CTGGCGAACA CCACGCATGG TTACCTTTAT
CTGCGCAGGC CAGACGCCGA CGTGATGGAC ATGCGGTTTT GCACCGGCAG GATCGCCCTC
AACCGCGGCA GCGTCATCGA ACCGGGCGAG GGGATTTCCG GGCGCGTCTG GCAGTCTGGC
GAACCGATGA TGGTGGAGAA CTATCGGATG TGGGAAGGGC GCCTCGATCG CCTGGAGGAG
ACCGATTTTG GTGCGATGAT TGCTGTGCCG CTCAAATCAA ACGGCGCCGT CATCGGGGTC
CTGGGCGTCG CCTACGATAC GCCGGATGGG GTTGATTTCC ATTCCATCGC CGCACTGCTC
ATGCGCTTCG CTGACCTGGC TGCGATTGCC ATTGACAATG CACAATTGTA CACCAAAGCC
CAGACCGAAC TGGCTGAACG AGTTCGCCGA GAAGCGGAAC TGCGGGATAC GACGCAGCAC
CTGCACGATC TGTACACTGT CGCGCACCGG CAGGCGCAGG AACTCCGCCT GCTCGGAGAG
GTGCGCGCGA CGCTGGCGCG CGAGATCAGT CTGCCTTCGA TCTTTCGGAC GGTCGTCGAG
TCGCTCGCCA GCACATTCGG ATACACCCAG GTGTGCATCT ATCTCCGCGC GCATGATGAA
CTGGTATTGC AACATCAAGT TGGGTATCAT TTCATCTACG AACGTATCCC GGTCGGCGTC
GGCATCATCA GTCGTACTAT TTTGAGTGAA CGCCCAACGC TGGTTGCTGA TGTGAGCGCC
GATCCCGATT TTCTCGGCGC CATTGATGGT GTGGTATCCG AAGTGTGTGT GCCGCTCCGC
GACAGAGGAA AGGTCATCGG CGCGCTCAAC ATCGAGAGCC GGCACGGGGT CGTGCTGACC
GACGACGACC TGCGATTAAT GACCGAACTG GCAGAGCATA TCAATGTTGC CATCGATCGC
GCCGGGCTGT ATGAACAGTT GTGGCGACAC CTTCAGCAAC TCGATGCGCT CTACAGCATT
ATGGGGGATA TTACCGGCAA CCTGCACCTC GATAATGTGC TGACGACGAT TGTCGAACGG
ATGATTGCGC TCGTTCGCGC AAAACACGGC GCGCTGGCGC TGTACGACGC GCAACACAAT
GATTTGCTCG TTCACCTGAG CATCAATATG GACTATGACT ATACCGGTGT GCGGCTGGCA
TTGGGAGAAG GCGCAATGGG CAAAGCGGCG CTGAAGCGTC ACCCGGTTGT CGTCTACGAC
TATCGCTCGT GGCGCGAACG CTCACTTCAG TGCGAAGCGG AATCGACAGC CAATGTGCTG
GCAGTTCCAT TGCTGGCAGG GGCCGAACTG ATCGGCGCGA TGAGCGCAGG AGATAGCGAT
CTCAAGCGTA TCTTCACCGA AGACGACGTC CGCTTGCTCA GCATGTTTGC GCAGCAGGCG
ACGATTGCCA TCAAAAATGC GCGGCTATTT GCCGAGGTGC AGCACCTGGC GATCACCGAT
CCATTGATGG GCATCTACAA CCGACGCTAC TTCTTTGTTG CGGCGCGGCG CGAATTCGAG
CGCGCGCGCC GCCATCGGCA TCCCCTGGCG GTGATCCTTG CCGATCTCGA TGATTTCAAA
CAGATCAATG ATGTCTATGG GCATCCGATC GGCGACCGGG TGTTGCAAAT GGTCAGCACG
GTGTTTCGCC GCGAACTGCG CTCCGGCGAT CTGCTGGCGC GCTATGGCGG CGAGGAGATT
ATTGCGCTGT TACCGGAGAC CGACCATGAG GGCGCCGTGC GGGGCGTCGA ACGGTTGCGG
TTGATACTGG CGCAGGCGGT TGTCGCCACG AACCAGGGCG ATGTGAGTGT GACTGCCAGT
TTTGGCGTTG CCATCTTTGC CGAACCGTTC GATGTACCGA ACGTCGAGCA GTTGATTACA
CAGGCGGATC AGGCGTTGCT CCGAGCAAAG CAGGCGGGGA AGAACCGTGT GGAAGTCTGG
CATGAGAAGG ACCACGTCGG TCAGAGTCGG TCTGTTTAG
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| Protein sequence | MSDAEALQSE NEALKARIRE LERRLTEART APNRRATEDD ATAFHQTALA IMNRLDLNNV
LEAIVAHAAH LANTTHGYLY LRRPDADVMD MRFCTGRIAL NRGSVIEPGE GISGRVWQSG
EPMMVENYRM WEGRLDRLEE TDFGAMIAVP LKSNGAVIGV LGVAYDTPDG VDFHSIAALL
MRFADLAAIA IDNAQLYTKA QTELAERVRR EAELRDTTQH LHDLYTVAHR QAQELRLLGE
VRATLAREIS LPSIFRTVVE SLASTFGYTQ VCIYLRAHDE LVLQHQVGYH FIYERIPVGV
GIISRTILSE RPTLVADVSA DPDFLGAIDG VVSEVCVPLR DRGKVIGALN IESRHGVVLT
DDDLRLMTEL AEHINVAIDR AGLYEQLWRH LQQLDALYSI MGDITGNLHL DNVLTTIVER
MIALVRAKHG ALALYDAQHN DLLVHLSINM DYDYTGVRLA LGEGAMGKAA LKRHPVVVYD
YRSWRERSLQ CEAESTANVL AVPLLAGAEL IGAMSAGDSD LKRIFTEDDV RLLSMFAQQA
TIAIKNARLF AEVQHLAITD PLMGIYNRRY FFVAARREFE RARRHRHPLA VILADLDDFK
QINDVYGHPI GDRVLQMVST VFRRELRSGD LLARYGGEEI IALLPETDHE GAVRGVERLR
LILAQAVVAT NQGDVSVTAS FGVAIFAEPF DVPNVEQLIT QADQALLRAK QAGKNRVEVW
HEKDHVGQSR SV
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