Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3751 |
Symbol | |
ID | 5541253 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4919750 |
End bp | 4920970 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640895862 |
Product | geranylgeranyl reductase |
Protein accession | YP_001433809 |
Protein GI | 156743680 |
COG category | [C] Energy production and conversion |
COG ID | [COG0644] Dehydrogenases (flavoproteins) |
TIGRFAM ID | [TIGR02023] geranylgeranyl reductase [TIGR02032] geranylgeranyl reductase family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0101048 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000524672 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAACCAG TCCTCGTGGT AGGCGCATCG GTGGGAGGCG CGACGGCTGC CGATACGTTG GCGCGCGCAG GTGTGCCGGT GGTGATGCTC GAACGCGATA CGTCGTATGT GAAGCCGTGT GGCGGCGCCG TGCCGCCGGT GGCGTTCACC GAGTTCGACT TGCCGGAAAC ATTGATCTCG CGCAAGGTGC ATCACGCGCT GGTGCATTCA CCGAGTGAAC GGGTCGTTGA AATTGAGGTT GCCGGCGTCC ATCGCTCCGA TCAGGATTAT ATCGCCATGT GCTGCCGCGA GGAGTTTGAC TGCTACATTC GTCAGCGTGC CGTGCAACAT GGCGCAACCC TGATCGAAGG TCAACTGATC GATCTAGCGT TCGATAAGGA GGGTGTGACG GTAACCTACC GCGAGCGGTT CGGCGGTGCG CGTCAGGAAC TGCGCGCTGT GGCGGTGATC GGTGCTGACG GGGCATACTC GACGACGGCA AAGCTGCTGG GTTTGCCCAA TCTGCCGCGC TGCATCGCCA TCCAGCAACG TATTCGCCTG CCTGCCAGCA AAATGGCGCG CTGGGAAGAT ACCGCCGATC TCTACCTGGG TCCTGAGGTC AGTCCCGATC TGTATGCCTG GGCGTTTCCC AAGAGCGACC ACGTGGCCGT TGGGATCGGA ACCGGACCGT CGCACAGCAA ACGCGCCCGT GAATTGCTCG CCAATCTGAA GCGTCGGATT TCCCGCGATC TTGAGGGTGG CGAGGTCATC CTCGAAGAAG CGCATGCGCT GCCGATGGAG CCGCGTGAGC ATATGGCGTT CGAGCGCGCT ATGCTGATCG GCGATGCGGC GGGTCTGGTG GTGCATACAT CGGGCGAAGG CATCTATTGG GCGATGAAGA GCGGCAAAAT GGCGGCAGAG ACGCTGATCG CCAGTCTGCC CGATGCGTCG CTCGCTGCGC TGCGGCGCTA TGAGCGCCGG TGGTGGAAGA CCTACGGCAC AATGTACCGC TTCCTCGTCT GGCTCCAGAA ATGGGGGTAC GGGAACGCGC GGCAGATGGA AGTCTTCACC GATATGTGCC GCAATCTGGA TGTGCAACGC CTGACGTTCG AGTCGTACAT GCACAAGAGT ATGACGCCGG TGCCGTGGCT GGCACAACTG CGTATGACGG CGGACATTAT CGCTGCGCAG GTGCGTCACT ACCTGCCACG CCGGCGGACG GGTCAACCGG CAGTCGCTTG A
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Protein sequence | MEPVLVVGAS VGGATAADTL ARAGVPVVML ERDTSYVKPC GGAVPPVAFT EFDLPETLIS RKVHHALVHS PSERVVEIEV AGVHRSDQDY IAMCCREEFD CYIRQRAVQH GATLIEGQLI DLAFDKEGVT VTYRERFGGA RQELRAVAVI GADGAYSTTA KLLGLPNLPR CIAIQQRIRL PASKMARWED TADLYLGPEV SPDLYAWAFP KSDHVAVGIG TGPSHSKRAR ELLANLKRRI SRDLEGGEVI LEEAHALPME PREHMAFERA MLIGDAAGLV VHTSGEGIYW AMKSGKMAAE TLIASLPDAS LAALRRYERR WWKTYGTMYR FLVWLQKWGY GNARQMEVFT DMCRNLDVQR LTFESYMHKS MTPVPWLAQL RMTADIIAAQ VRHYLPRRRT GQPAVA
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