| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3720 |
|---|
| Symbol | |
|---|
| ID | 5541222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4877845 |
|---|
| End bp | 4878534 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640895831 |
|---|
| Product | dTMP kinase |
|---|
| Protein accession | YP_001433778 |
|---|
| Protein GI | 156743649 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0125] Thymidylate kinase |
|---|
| TIGRFAM ID | [TIGR00041] thymidylate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00484768 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTCT TCGTTACATT TGAGGGTCCT GAAGGGAGCG GCAAAAGCAC GCAGGCGCGG
TTGCTCTATG AATCGTTGTA CGCGCGTCGC TATCCGGTCA TTCTGACGCG AGAGCCGGGG
GGGACGCGGA TCGGTGACCT GATCCGCCGG ATCGTTCTGG ACCTCCAGCA TACCGAGATG
GCGCCAACGA CCGAAACATT GCTCTTTTCG GCAGCGCGGG CGCAACTCGT CAGCGAGGTC
ATTCGTCCGT ACCTGGAACA GGGCGGCATT GTGCTGTGCG ACCGGTATGC CGATTCGACC
TATGCCTACC AGGGGTATGG GCTGGGGCGC GATCTGGCGG AGTTGCGCAC GATTACTGCG
GCGGCGACGG GTGGCCTGCG CCCTGATATT ACGTTTTATC TCGACATCAG CGCCGAAGAC
GGACTGGAAC GAAAACGCCG GAAGCATCCC GGCGCGCGTC TGATGGGTCA GCGCGGCGTC
GATCAGGAAT GGAACCGCCT TGATGCGCGA GAACTGGAGT ATCATCAACG GGTGGAAGCG
GGGTACCGCG CGTTGATTGC CCAGGACCCT GAGCGCTGGC GGGTGCTTGA TGCACGGCAG
TCGATCGAGG CGCTGGCAGA GCAGATCGCG GCGATTGTCG AGCCGTATCT GGCGTCGATT
CCGCAGTTGG AAGCCGTGCC GTACTCTTGA
|
|---|
| Protein sequence | MSLFVTFEGP EGSGKSTQAR LLYESLYARR YPVILTREPG GTRIGDLIRR IVLDLQHTEM
APTTETLLFS AARAQLVSEV IRPYLEQGGI VLCDRYADST YAYQGYGLGR DLAELRTITA
AATGGLRPDI TFYLDISAED GLERKRRKHP GARLMGQRGV DQEWNRLDAR ELEYHQRVEA
GYRALIAQDP ERWRVLDARQ SIEALAEQIA AIVEPYLASI PQLEAVPYS
|
|---|
| |