| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3594 |
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| Symbol | |
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| ID | 5541095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4691015 |
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| End bp | 4692739 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895713 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001433661 |
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| Protein GI | 156743532 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGGTG GTGATCGCGT GGCACTGGCG CTTCAGGCGC ATGGGGTGCG TTTCGTTTTT
ACCCTGACCG GCGGGCATAT CGCGCCCATC CTGGTTGGTT GCCGTCAACG CGGCATTCGT
GTGATCGACA CGCGCCATGA GGCGACTGCC GTGTTCGCCG CCGATGCTGT GGCGCGACTG
ACCGGCGTGC CCGGTGTCGC TGTAGTGACT GCCGGTCCTG GCGTGACGAA CACGATCACG
GCGATCAAGA ATGCGCAGAT GGCGCAATCG CCGCTGGTGC TGATCGGTGG CGCAGCGGCG
ACTGCACTGC GGGGACGCGG CGCGCTTCAG GATATTGACC AGATGGCGCT GATGCAATCA
ATCACGAAGT GGCGTCGGTC GGTTGCGCGG GTGCGGGAGA TTATTCCGGC GCTGGAGGAG
GCATTCTTTC AGGCGCGCAG CGATGTGCCC GGTCCGGTGT TCGTCGAACT GCCGGTCGAT
CTGTTGTACG ACGAACAGGT GGTGCGCCGG TGGTACGGTC TCAATCGTAG TGGACGCTCT
CCAAAGCAAT GGATTGTTCA GCGGTATCTC GACTGGCGGG TGAGTCGATT GTTTGCCGGC
GTGCAGGATC AACCGGTGGC GACGTCCCGT TTGGTCGATG TTCCTGAACC AGAAGACGGC
GCGGTGCGCG CGGCGGTGCT CCGCCTGGTG CAATCACAAC GTCCGCTCCT GTTGGTAGGA
AGTCAGACGA TGCTCGATAC GGCGTCGGTC GGTGCGTTGG CGAAGGCAGT CACCCGGCTG
GGTGTGCCGA CGTATCTCTC TGGCATGGCG CGTGGGTTGC TCGGCGCGAA TCACGCATTG
CAGTTGCGGC ACCGGCGGCG CGAGGCGCTG CGCGAAGCCG ATCTGGTCAT TCTTGCGGGT
GTGCCGTGCG ACTTCCGCCT CGACTATGGC AACCATATTG CGCGTCGCGC CACGCTTATC
GCCGCCAACC GCAGCCGCAC CGATCTGATG CTCAACCGGC GCCCCGACAT TGCGGTGTTG
GGAGACCCGG CGCGCTTTGT GTGTATGCTG GCGGAACGGG TGTTGCCCGG TGATCCCTGG
AAGGAATGGA TCGAACGGTT GCGTCAGCGC GATGCCGTCC GCGATGCTGA GATTGTGCGT
CAGGCAGCCG AACCGACATC CTATGTCAAT CCGATCCATC TCTGCCGGGT GATCAACGAG
ACGCTTTCCG ATCACAGCAT AATTGTTGCC GATGGCGGCG ACTTTGTGGC AACCGCGTCG
TACACGGTGC GTCCGCCGCG CCCGTTAAGC TGGCTCGATC CGGGACCGTT CGGCACACTC
GGCGTTGGCG CGGGATTTGC GCTCGGTGCG AAACTCTGTC AGCCTGATGC GGATGTCTGG
CTTCTGTATG GAGATGGGTC TGCCGGCTAC AGCCTGACCG AATTCGACAC TTTTGTGCGC
CACCAGGCGG CAGTGGTTGC GGTCATAGGA AATGACGCTG GCTGGACGCA AATTGCGCGT
GAGCAGGTGG AGATTCTGCA CGACGATGTG GCAACCACGC TGGCGTATAG CGACTACCAT
CGGGTGGCGG AGGGGTTCGG CGCTGCTGGC TATCGCCTCG ACGACCCGGA ACTGGCGGAG
GAGACCTTGA AGCAGGCGCG CCAGACGGCT GCCCAGGGCA GACCGGTGCT CGTCAATGCT
CTGATCGGCA AAACCGATTT TCGTAAGGGG TCGATTTCCA TGTGA
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| Protein sequence | MHGGDRVALA LQAHGVRFVF TLTGGHIAPI LVGCRQRGIR VIDTRHEATA VFAADAVARL
TGVPGVAVVT AGPGVTNTIT AIKNAQMAQS PLVLIGGAAA TALRGRGALQ DIDQMALMQS
ITKWRRSVAR VREIIPALEE AFFQARSDVP GPVFVELPVD LLYDEQVVRR WYGLNRSGRS
PKQWIVQRYL DWRVSRLFAG VQDQPVATSR LVDVPEPEDG AVRAAVLRLV QSQRPLLLVG
SQTMLDTASV GALAKAVTRL GVPTYLSGMA RGLLGANHAL QLRHRRREAL READLVILAG
VPCDFRLDYG NHIARRATLI AANRSRTDLM LNRRPDIAVL GDPARFVCML AERVLPGDPW
KEWIERLRQR DAVRDAEIVR QAAEPTSYVN PIHLCRVINE TLSDHSIIVA DGGDFVATAS
YTVRPPRPLS WLDPGPFGTL GVGAGFALGA KLCQPDADVW LLYGDGSAGY SLTEFDTFVR
HQAAVVAVIG NDAGWTQIAR EQVEILHDDV ATTLAYSDYH RVAEGFGAAG YRLDDPELAE
ETLKQARQTA AQGRPVLVNA LIGKTDFRKG SISM
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