Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3564 |
Symbol | |
ID | 5541065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 4653848 |
End bp | 4654798 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640895683 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001433631 |
Protein GI | 156743502 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.264329 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATACGC CTCATCCTCA ACCACGCATC GTCGTGCATC CCGGCACACG GCGAACCAAC CGCCGGCAGC GCATCGAAGC GATCAACGCC TATATTTTTA TGGCGCCGGC CATCCTGGGT TTGCTCTTCT TCACGCTGGG TCCCATGGTC GCCTCATTGT TGCTCAGTTT CACTGAGTAC AATATTTTGA CCGATCCACG CTGGAATGGT CTGGCGAACT ACGAACGACT CTTCAACGAC AAACTGTTCT GGCAGTCGCT CAGGGTCAGC GCCATCTATT CGATCATCAG CGTGCCGTTG GGTCTGGTTG TCGCCCTGGG GCTGGCGCTG CTCCTGAACC ACAAAATGCG CGGAATACTG TTTTTTCGCT CGGTGTACTA CCTGCCGACG GTTATTTCCG GCGTTGGTGT CGCAATGCTC TGGCGCTGGC TGTTCAATGG CGACTACGGC ATTATCAATA TTGTGCTGCG CAATGTTGGC ATCCGCGGTC CCAACTGGCT GTTCGACGAA ACGTGGGCGC TGGTGGCGTT GATTATCGCC AGTCTGTGGG GAGTTGGCGG AACAATGCTG ATCTTCCTGG CAGGGTTGCA GGGCATTCCG CAGGAATTGT ACGAAGCCGC CGAGATCGAC GGCGCCGGAC GGTGGCGACA GTTTACCAGC ATCACGCTGC CGATGATCTC GCATGTCACC TTCTTCAACC TGGTGCTGGG AGTTATTGGC GCATTGCAGG TTTTCACCGA CGCGTATGTG ATTACCGGCG GCGGACCGAA CAACGCCACG CTTTTCCTTT CGGTCTATCT CTATCGACAC GCCTTCCAAT ACCTGAACTT TGGCTATGCC GCCGCCGTGG CGTGGGTGCT GTTCCTGATC GTTCTGGCGC TGACCTTGCT GGTCTTCAAA TCGTCGCCGC TCTGGGTTTA CTACGAGAGT GAGCGACCGG GGAGGAACTG A
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Protein sequence | MDTPHPQPRI VVHPGTRRTN RRQRIEAINA YIFMAPAILG LLFFTLGPMV ASLLLSFTEY NILTDPRWNG LANYERLFND KLFWQSLRVS AIYSIISVPL GLVVALGLAL LLNHKMRGIL FFRSVYYLPT VISGVGVAML WRWLFNGDYG IINIVLRNVG IRGPNWLFDE TWALVALIIA SLWGVGGTML IFLAGLQGIP QELYEAAEID GAGRWRQFTS ITLPMISHVT FFNLVLGVIG ALQVFTDAYV ITGGGPNNAT LFLSVYLYRH AFQYLNFGYA AAVAWVLFLI VLALTLLVFK SSPLWVYYES ERPGRN
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