| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3441 |
|---|
| Symbol | |
|---|
| ID | 5540940 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4491609 |
|---|
| End bp | 4492652 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640895559 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001433509 |
|---|
| Protein GI | 156743380 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.462369 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0726285 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCATG TGCCACTGAC CGGCATAACG GTGCTTGACC TCTCACGACT GATCCCTGGT
CCGTATGCAA CCCTTCTCCT GGCGCAGATG GGGGCGCATG TCATCAAAGT CGAGCCGCCG
GGCATGGGCG ATTACCTGCG CCTGCTGCCG CCGCACGGTC CTGACGGGAT GAACCCGATC
TTCACGGCGC TGAATCGAGG CAAACAGAGT ATCGTTGTCG ATCTGAACGA TGCTGCGGGA
CAGCGCATCC TGCGCGAACT GGCGAAACGC GCCGATGTGC TGGTGGAAAG TTTTCGTCCT
GGCGTGCTGG ATCGTTTCGG CGTCGGACTC GAGTTGCTGC GCCATGACAA TCCGCGCCTG
ATCACCTGTT CGCTGGCAGG GTATGCCGCC GACAGTCCGC TGGCGAGTGC GCCAGGACAT
GATCTGACCT ATCAGGCGGT GGCCGGCGCA CTCCGTCTGA CAGCAGCGCC ACCGACTCTG
CCGGCGCTGC CGCTAGCCGA TCTGGCGGGC GGCTTATTTG CCGCACTGGG CATTCTGGCG
GCGCTGGCGG CGCGCCACAT CAGCGGCGAA GGACAACACG TTCCGGTGAC GCTCGAAGAG
AGCATTGGCG CACTGCTTGT GCTGGAACAT TCCGAGATAG ATATGCCGAT GCGGTTTGGC
GATATGCTGC GCGGCAGTCG CGCCGGGTAT CGGCTCTACC GATGCAGCGA CGGTCGTTAT
CTGGCGCTGG CGGCGCTCGA AGAAAAGTTC TGGAATGCGT TCTGCAACGC AGTTGGACGG
AGCGCGTGGC GCGCGCGTTT TGCCGAGTTC GATCAGGAAC CGTTGGCTGC CGAGGTTGCC
GCGCTGCTGG CAGAACGACC GGCGCGTGAA TGGGAAGCGC TGCTGCTCGC CGCCGATGTG
CCGTGCGCAG TGGTAGCGAC GCTGGCGGAA GCGCGGAGAT ATGCGCCGCT GCCGTTTGCC
GCCGGAGGCG CGCCGCCGGA AGCGCCGGCG CCGAAACACG GCGAACACAC CGGAGCAGTG
CTGCGCGAAT GGAAGATCGC ATAA
|
|---|
| Protein sequence | MNHVPLTGIT VLDLSRLIPG PYATLLLAQM GAHVIKVEPP GMGDYLRLLP PHGPDGMNPI
FTALNRGKQS IVVDLNDAAG QRILRELAKR ADVLVESFRP GVLDRFGVGL ELLRHDNPRL
ITCSLAGYAA DSPLASAPGH DLTYQAVAGA LRLTAAPPTL PALPLADLAG GLFAALGILA
ALAARHISGE GQHVPVTLEE SIGALLVLEH SEIDMPMRFG DMLRGSRAGY RLYRCSDGRY
LALAALEEKF WNAFCNAVGR SAWRARFAEF DQEPLAAEVA ALLAERPARE WEALLLAADV
PCAVVATLAE ARRYAPLPFA AGGAPPEAPA PKHGEHTGAV LREWKIA
|
|---|
| |