Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3439 |
Symbol | |
ID | 5540938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 4488170 |
End bp | 4490680 |
Gene Length | 2511 bp |
Protein Length | 836 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640895557 |
Product | ATP-dependent protease La |
Protein accession | YP_001433507 |
Protein GI | 156743378 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0466] ATP-dependent Lon protease, bacterial type |
TIGRFAM ID | [TIGR00763] ATP-dependent protease La |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.105513 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGAAG AATCGCCGAT ACTCTTCGAC TTCCCGATCA ACCCGGAGTC TGCGCTGATC GACGGCCAGG GGCAGGAGCG TATCCTCCCG GTTGTGCCGT TGATCAATAC CGTGTTATTT CCGCATATGC TCACGCCTCT CTTCGTTGGG CGCGAGCGAT CCGTGGCGGC CATCGAGGAG GCGATGAGTG GAGATCGCAC AATTCTGGCA GTTGCACAGC GCGAACCGGA TATCGAAGAC GTCGGACCCG CCGATCTGTA CGCCGTTGGC GTCGAGGCGG TAATTCAGCG GATTCTCAAG ATGCCTGACG GTTCGATCTC AATCGTCGTC CAGGGGCAAC GGCGCATGCG CGTTGTGGCA TATGTGCAGG ATCGTCAGGT GCTGCACGCG CAGAGCATCG CCATTTACGA GAACACCGAA AAGACGATCG CCGTCGAAGC CATGATGCGC GCAGTGCTCT CATTGTTCGA GAAAGTCGTC AAACTGTCGC GCACCCTGCC CGACGATGCC TATATTATGG CGATGAATGT CAGCGAACCG GGATGGCTGG CGGACCTGAT CGTCTCGACA TTGCCGCTCG ATGTGCCGCG CCGCCAGGAG ATATTGGAGA CGCTCGACGT TGAGGAACGG CTGCGTCGCC TGTCGATCAT GCTCTCGCAG GAGCTTGATG TCCTCGAACT CGAAAGTCGC ATTCACACCC AGGTTCAGAA GGAAGTCGAC CGGTCGCAGC GCGAGTTCTT CCTGCGCGAA CAGATGAAAG CCATTCAACG CGAATTGGGG CAGACCGACC CGATCCAGCG CGAGATGGAC GAACTGCGTG AGCGGATCCT GGCGGCGGCA ATGCCTGAAC GCGCGCAGGC AAAGGCGCTC GAAGAACTGG AGCGCATGGA GATGATGCCG CCAGCCTCGC CTGAATACAG CGTGCTGCGC ACCTACCTCG ACTGGCTGAT CCATTTGCCC TGGAGTCAGC AGACCGAAGA CGATACCGAC CTGGTGCGCG CAGCCGCGAC GCTCGAACGC AACCACTATG GTTTACCGCG CGTCAAGGAG CGCATTCTGG AGTTTATGGC AGCGCGGATG CTCGCCGGTT CGCGGCTCAA GTCGCCGATC ATCTGTTTTG TCGGTCCTCC GGGTGTGGGA AAAACCTCAC TCGGTCGCTC GATTGCCGAA GCACTGGGGC GACGCTTTGT GCGCATTTCG CTGGGAGGCG TCCACGACGA GGCGGAGATT CGCGGACACC GGCGCACCTA TATCGGCGCA ATGCCAGGGC GGATCGTCAA GGCGATGAAA GATGCCGGAA CCATCAATCC GGTCTTTATG CTCGATGAGA TCGATAAATT GGGCAGCGAT TTTCGCGGCG ATCCGGCATC GGCGCTGCTG GAAGTCCTCG ACCCGGAGCA AAATGTCGCG TTTACCGACC ATTACCTCGA TCTGCCGTAT GACCTGTCGC GCGTGCTCTT TATTACGACC GCCAACCTGC TTGATCCGAT TCCGCCAGCG CTGCGCGATC GCATGGAAGT GATCCATTTG CCAGGATATA CCGAGGAGGA GAAACTGGAA ATTGCGCGCC GATTTTTAGT TCCGCGGCAA CTGGAGGCGA ACGGTCTTGC AAGCCCGGAG TACGTCGCGC AGAGCGCCAT AGCCCTGATG AAGGACCCGG TGGCATTATC GAAGATGCCC GGAACGGTGT TGCGCTTCAG CGACAGTGCG CTGCGTCAGA TCATCCGGGG GTATACGTAT GAAGCGGGGG TGCGCAACCT CGAACGCGAA ATTGGCGCGA TCTGCCGCAA GGTAGCACGG CGCCTGGCGG AAGGTCGCAA TTATGCCCAT ATTATTCAGG CGTCTGCGCT CAACCGTTAT CTGGGTCCCC CGCGCTACCT CTACGGTCTT GCCGAGCAAC AGGACGAGGT AGGAGTGGCA ACCGGCATGA GCTGGACTGC CAACGGCGGC GATGTGATGG CCGTCGAGGT TTCACTAATG AAGGGACGCG GGGTGTTGTC GCTGACCGGA CAACTCGGCG AGGTGATGCG CGAGTCGGCG CAGGCGGCGC TCTCGTTTGC GCGCGCCAAT GCCGAAGCGC TCGGCATCAA GCCCAAACGT TTTGAGACGA CTGATATTCA CATTCATGTG CCGGTCGGCG CGGTTCCCAA GGATGGTCCG TCTGCCGGAA TTACGATGGC AACGGCGCTG ATTTCGGCGT TTACCGGTCG ACCGGTGCGC CGCGATGTGG CGATGACCGG CGAAATCACC CTTCGCGGAC GGGTATTGCC GGTCGGCGGG ATCAAGGAAA AGGTGCTTGG CGCTCACCGC GCTGGCATTC TCACCATTAT TCTGCCACGA CGCAACGCCG TGGATCTCGA AGAAGTTCCG GCGCACGTGA AACGCCGGTT GAACTTCGTC TATGTCGATC ATATGATGGA AGTCATCGCC TGCGCGCTGT GTGAGCATGG CGACAGGCGC GTGTCCGCCG CGTCCACCGA GGGAACACCG GTCAACGGAT CACAACCCTG A
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Protein sequence | MPEESPILFD FPINPESALI DGQGQERILP VVPLINTVLF PHMLTPLFVG RERSVAAIEE AMSGDRTILA VAQREPDIED VGPADLYAVG VEAVIQRILK MPDGSISIVV QGQRRMRVVA YVQDRQVLHA QSIAIYENTE KTIAVEAMMR AVLSLFEKVV KLSRTLPDDA YIMAMNVSEP GWLADLIVST LPLDVPRRQE ILETLDVEER LRRLSIMLSQ ELDVLELESR IHTQVQKEVD RSQREFFLRE QMKAIQRELG QTDPIQREMD ELRERILAAA MPERAQAKAL EELERMEMMP PASPEYSVLR TYLDWLIHLP WSQQTEDDTD LVRAAATLER NHYGLPRVKE RILEFMAARM LAGSRLKSPI ICFVGPPGVG KTSLGRSIAE ALGRRFVRIS LGGVHDEAEI RGHRRTYIGA MPGRIVKAMK DAGTINPVFM LDEIDKLGSD FRGDPASALL EVLDPEQNVA FTDHYLDLPY DLSRVLFITT ANLLDPIPPA LRDRMEVIHL PGYTEEEKLE IARRFLVPRQ LEANGLASPE YVAQSAIALM KDPVALSKMP GTVLRFSDSA LRQIIRGYTY EAGVRNLERE IGAICRKVAR RLAEGRNYAH IIQASALNRY LGPPRYLYGL AEQQDEVGVA TGMSWTANGG DVMAVEVSLM KGRGVLSLTG QLGEVMRESA QAALSFARAN AEALGIKPKR FETTDIHIHV PVGAVPKDGP SAGITMATAL ISAFTGRPVR RDVAMTGEIT LRGRVLPVGG IKEKVLGAHR AGILTIILPR RNAVDLEEVP AHVKRRLNFV YVDHMMEVIA CALCEHGDRR VSAASTEGTP VNGSQP
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