| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3415 |
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| Symbol | |
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| ID | 5540914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4445878 |
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| End bp | 4446729 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640895533 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001433483 |
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| Protein GI | 156743354 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.17955 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATCG CGTTAACCGG CGTCATCGGC GATCCGGTGA GCCATAGCCT GTCGCCCTTT
CTGCACCATG CCGCGTTCGA GCATCTGGGC ATTGCGGCGC GCTACGAACG CTGGCAGACG
AGCAGCGCAG CACTGCCGGC GCGTGTCGCT TCGTTGCGCG CGCCGCATGT CTTGGGCGCT
AACGTAACAC TGCCGCACAA GATTGCCGTG GTGCGGCTTC TTGATCGACT CGATCCTCTG
GCAGCGCAGA TCGGCGCGGT CAACACGATT GTGCGTCTCC CCGATGGACA ACTCGAAGGG
TGCAACACCG ACGCGCCTGC CACCATTGCG ACGCTCCGGG AGGATGCCGG TGTTGATCCG
GCAGGCAGGC GCGTGGTGAT CCTGGGAGCT AGCGGCGCTG CCCGTGCTGC GGCATTTGCG
CTGATCGGCG CGCGAGCATC GATGCTGACC GTCATCAATC GCACTTTGGA GCGCGCTGAG
GAATTGCTGG CGGATGTGCT CGCCAGCCGC GATGACGACC CGTATCTGCG CGCGCTGGCG
CTCGATGACC CGGATGTTCC AGACGCGATT CGCGCAGCGG ATGTGATTAT CAATGCCACA
TCGCTCGGCT GGCATCGCGA CGAAACCCCG CTGCCGGGCT ATCTGATCCC GGCGACGGCG
CTGGTGTTCG ACATGGTGTA TCAGCCGACA CGCTTGCTGC GTGAGGCAGC GCAGGCTGGC
GCATCGACGC TCGATGGGCG CGGCATGCTG GTGCGACAGG CGGCGTTGTC GTTCGAGCGC
TGGACTGGTG CGCCTGCGCC GCTCGACGTG ATGTTTGCCG CATTCGATCA GGCGCGCAGC
ATGGCTGCAT AG
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| Protein sequence | MSIALTGVIG DPVSHSLSPF LHHAAFEHLG IAARYERWQT SSAALPARVA SLRAPHVLGA
NVTLPHKIAV VRLLDRLDPL AAQIGAVNTI VRLPDGQLEG CNTDAPATIA TLREDAGVDP
AGRRVVILGA SGAARAAAFA LIGARASMLT VINRTLERAE ELLADVLASR DDDPYLRALA
LDDPDVPDAI RAADVIINAT SLGWHRDETP LPGYLIPATA LVFDMVYQPT RLLREAAQAG
ASTLDGRGML VRQAALSFER WTGAPAPLDV MFAAFDQARS MAA
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