| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3404 |
|---|
| Symbol | |
|---|
| ID | 5540903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4435090 |
|---|
| End bp | 4435701 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640895522 |
|---|
| Product | endopeptidase Clp |
|---|
| Protein accession | YP_001433472 |
|---|
| Protein GI | 156743343 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCATACG TACCGGTTCC AACAATTGTC GAGCGCACCC CACGCGGTGA ACGCTCGTGG
GATCTGTTCT CGCGCCTCTT GCAGGAACGT ATCATTCTGC TTGGCACTCC TATCGACGAC
GAAGTCGCTT CGTTGATCGT TGCGCAACTC TTGTATCTGC AACATACCGA CCCGGATCGC
GACATCTGGT TTTACATCAA CAGTCCTGGC GGCAGTGTGC GCGACGGTCT TGCCATTTAT
GATACGATGA AACTTATTTC GCCCGATGTC TGCACCGTTT GCATCGGGCG CGCCGGCAGT
ATGGCGACTA TTCTGCTTGC TGGCGGCGCG CGTGGCAAAC GCTACGCCCT TCCGAACGCC
ACGATCCATT TCCATCCGGC TGGCGGCGGC GCCGAAGGGT ATGCGCCCGA TATGGAGCGC
ATCGTCAGAG AATTGTTACG AATTCAGGAA CTCGGAAATA GTCTGCTTGC CAGAGACACC
GGCAGAACCG TCGAAGAAAT CACCCGCGAT TTCAGCCGTG ACCGCTTCAT GACCGCGCAA
GAGGCGCGCG AATACGGCTT CATCGACGCC ATCCTCGAGT CCAAGAAACT TCCGGCGTCA
ACGCCAGCGT AG
|
|---|
| Protein sequence | MPYVPVPTIV ERTPRGERSW DLFSRLLQER IILLGTPIDD EVASLIVAQL LYLQHTDPDR
DIWFYINSPG GSVRDGLAIY DTMKLISPDV CTVCIGRAGS MATILLAGGA RGKRYALPNA
TIHFHPAGGG AEGYAPDMER IVRELLRIQE LGNSLLARDT GRTVEEITRD FSRDRFMTAQ
EAREYGFIDA ILESKKLPAS TPA
|
|---|
| |